Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0520 | ATGTATATAATTTCCGCATATTCTCATTCCTCCAAATTTCCGACTTCCAGGTTTCTCTGTCCTCCACCCACCACCGAAGATCGTATTCTCTTTCGGTCTTCTCTTCTCTTCTCCCTCCACTTTACTCCTCTCTCAAGGAAAGAATCCGGTGTTTTCAGAGGTGACCCAGAAAAAGAAAAGGTCAATTTGGTGATGACATTAGCATTCATCACAGTTGCTTTGAGGATAATCCCTTTGGATCCCCATGTCTTTAACCTTACTGAACATAGGCTGCTAATTTTACAGGAGTTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGTTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCTATGAATTCCACAGCATCGACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGATCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGATGTGGATACCGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAATGGTTCTGCTTGTCTTGAGGAATCTAAAGAAAACCTTGGCAAATCATCTCTAAAGTTCCCTTCAACTAAATCTACCACTGGACTTGGGTATTCTTATACATCCTCCGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGATGAAACGACTTGA | 981 | 41.79 | MYIISAYSHSSKFPTSRFLCPPPTTEDRILFRSSLLFSLHFTPLSRKESGVFRGDPEKEKVNLVMTLAFITVALRIIPLDPHVFNLTEHRLLILQEFGTMGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSDVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6655824 | 6661320 | - | CaPI482276_11g005200.1 | Cam11g0520 | 139442 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0520 | 326 | MobiDBLite | consensus disorder prediction | 155 | 188 | - | - | |
Cam11g0520 | 326 | SUPERFAMILY | RING/U-box | 270 | 322 | - | - | |
Cam11g0520 | 326 | MobiDBLite | consensus disorder prediction | 202 | 228 | - | - | |
Cam11g0520 | 326 | Pfam | Ring finger domain | 275 | 316 | IPR001841 | - | |
Cam11g0520 | 326 | SMART | ring_2 | 276 | 316 | IPR001841 | - | |
Cam11g0520 | 326 | MobiDBLite | consensus disorder prediction | 202 | 222 | - | - | |
Cam11g0520 | 326 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 253 | 323 | - | - | |
Cam11g0520 | 326 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 323 | IPR013083 | - | |
Cam11g0520 | 326 | MobiDBLite | consensus disorder prediction | 155 | 175 | - | - | |
Cam11g0520 | 326 | ProSiteProfiles | Zinc finger RING-type profile. | 276 | 316 | IPR001841 | - | |
Cam11g0520 | 326 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 100 | 322 | - | GO:0004842(PANTHER) | |
Cam11g0520 | 326 | CDD | RING-H2_AIRP1-like | 272 | 320 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam11g0520 | Cam-Chr11:6655824 | Cam01g0254 | Cam-Chr1:2856386 | 4.30E-17 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0520 | - | - | - | 0.0 |