Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0520 ATGTATATAATTTCCGCATATTCTCATTCCTCCAAATTTCCGACTTCCAGGTTTCTCTGTCCTCCACCCACCACCGAAGATCGTATTCTCTTTCGGTCTTCTCTTCTCTTCTCCCTCCACTTTACTCCTCTCTCAAGGAAAGAATCCGGTGTTTTCAGAGGTGACCCAGAAAAAGAAAAGGTCAATTTGGTGATGACATTAGCATTCATCACAGTTGCTTTGAGGATAATCCCTTTGGATCCCCATGTCTTTAACCTTACTGAACATAGGCTGCTAATTTTACAGGAGTTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGTTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCTATGAATTCCACAGCATCGACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGATCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGATGTGGATACCGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAATGGTTCTGCTTGTCTTGAGGAATCTAAAGAAAACCTTGGCAAATCATCTCTAAAGTTCCCTTCAACTAAATCTACCACTGGACTTGGGTATTCTTATACATCCTCCGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGATGAAACGACTTGA 981 41.79 MYIISAYSHSSKFPTSRFLCPPPTTEDRILFRSSLLFSLHFTPLSRKESGVFRGDPEKEKVNLVMTLAFITVALRIIPLDPHVFNLTEHRLLILQEFGTMGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSDVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6655824 6661320 - CaPI482276_11g005200.1 Cam11g0520 139442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0520 326 MobiDBLite consensus disorder prediction 155 188 - -
Cam11g0520 326 SUPERFAMILY RING/U-box 270 322 - -
Cam11g0520 326 MobiDBLite consensus disorder prediction 202 228 - -
Cam11g0520 326 Pfam Ring finger domain 275 316 IPR001841 -
Cam11g0520 326 SMART ring_2 276 316 IPR001841 -
Cam11g0520 326 MobiDBLite consensus disorder prediction 202 222 - -
Cam11g0520 326 FunFam E3 ubiquitin-protein ligase At3g02290-like 253 323 - -
Cam11g0520 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 323 IPR013083 -
Cam11g0520 326 MobiDBLite consensus disorder prediction 155 175 - -
Cam11g0520 326 ProSiteProfiles Zinc finger RING-type profile. 276 316 IPR001841 -
Cam11g0520 326 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 100 322 - GO:0004842(PANTHER)
Cam11g0520 326 CDD RING-H2_AIRP1-like 272 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g0520 Cam-Chr11:6655824 Cam01g0254 Cam-Chr1:2856386 4.30E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0520 - - - 0.0