Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0552 ATGGCTTCACCTTCTCCAAGCATTTCTCCTCCTGAGAATCCATCAGATTCCTCAGTTTCTTCACCTCCTTCTCCTTCTTCTCCGGTGGAGTCTGCAACCTCTCCCTCGTCTCCCACATCTTCTGAGCCAAATCAGACTGGTGAACCTCCTTCATCACTTTCTAGTTCTTCAGCTCCACCTCCTCAGTCACCACCAGCTGTTCCTGATGCTCCTCCTCCTTCTCCTCCATTGTCTCCTCCTCCATTGACAGCATCACCACCTGCAACACCAGCATCCCCACCTCCTTCTCCCCCTGCTGGTTCACCACCTTCACCTCCCCAATCTTCGCCCTCGCCGCCATCACCTCCGCCACCTTCAACACCATCCTCCCCACCACCACCACCACCACCACCTTCAACATCAACCTCTCCACCACCACCTTCAACAACATCACCACCACCTTCCTCTGCATCACCACCTCCCCCAGAGAGATCAACTACCTCTCCTCCTCCTCAAACTTCACCTCCCCCTCCTGATTTATCACCTCCACCGCCACCAGCAGCAGCAGATGGTTCTCCACCTCCTGCATCCAATCCTAGACCTCCATCTTCAACGCCCTCGCCCCCTCCCCCTGATACAATTTCACCTTCTCCACCTCCACCAACTAATGTCCCAACACCACCTTCATCAACAGGAGAATCACCTAAAGTATCTCCCCCATCCCACAAGGCTTCTCCTCCTCCTTCTGATTCTCAATCTCCACCTTCAGATAACTCCCCTCCACCAAGATCCACAGTACCATCACCTCCTTCTTCAGTTCCTTCATCGTCTGCTCCTCCTCCAGTTAGTGACCCTGGTTCTCCAACTAATTCATCTGGTGGAACTCCTGTTACCCCTCCAACTTCTGTTACACCAGAACGACCAATTGCAACAATCAATGGTACCAATGTTACAGCAAATAACTCAACCACTAGCAAGGGGGGTTTCAGCACTGGAGCATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTCTGTGGTTTGTTCAGAAACGGAAGAGAAGAAAGAAGAATATCCCTTACACCATAGCTTCTCCTTTTTCCTCGCAAAACTCAGATTCCCTTTTCCTAAGGCCGCATTCTTCAGCTCCTGTAGTAGGAAGTCGTACTGATAGTGATTTCAAGTATTCATCATCGGAAGGAGGTGGAGTAGGTAATTCCAGATCGTTTGCTTATGATGACCTACACCAGGCAACAAGTGGGTTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTATAAAGGCACCCTTGCAGATGGAAGAGACGTGGCTGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTTGGTTACTGTATCTCTGATTACCAAAGATTGCTTGTCTACGATTATGTTCCAAACAATACCCTTCATTACCATCTACACGGGGAGAACAGGCCAGTTTTGGCTTGGGCTACACGTGTTCGGATTGCTGCTGGTGCAGCTCGTGGAATTGCTTACCTACATGAAGATTGTCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTTGATATCAACTTTGAAGCTCAGGTCGCAGATTTTGGGCTTGCTAAATTGGCACTGGATTCACATACTCATGTAACAACTCGTGTTATGGGAACCTTTGGATACATGGCCCCAGAGTACGCAACGAGTGGGAAATTGACAGATAAATCTGATGTTTTCTCTTTCGGGGTTGTACTTTTGGAGTTAATTACTGGTCGCAAGCCTGTGGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGGCTCGACCCTTGCTTGCACAAGCCATTGAGGATGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGACAACAATTATGTAGACAGAGAAATGTTCCGGATGATCGAAGCAGCCGCTGCTTGTGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAGAGTGGAGTGTTTGATTCAGCTGAACAATCTGCTCAGATTAGAATGTTTCAGAGAATGGCTTTTGGCAGTCAAGATTATAGTTACGGTTATTCCGAACGAGATCGCAGTCGAAGTTATAGTCAAAGTCATAGTAACTGGAGTAGAGAATCCAGAGATCAAAGTCCCTCGGCGCCTATGAATCGATCCCGGCAATGGAACATCTGA 2340 48.16 MASPSPSISPPENPSDSSVSSPPSPSSPVESATSPSSPTSSEPNQTGEPPSSLSSSSAPPPQSPPAVPDAPPPSPPLSPPPLTASPPATPASPPPSPPAGSPPSPPQSSPSPPSPPPPSTPSSPPPPPPPPSTSTSPPPPSTTSPPPSSASPPPPERSTTSPPPQTSPPPPDLSPPPPPAAADGSPPPASNPRPPSSTPSPPPPDTISPSPPPPTNVPTPPSSTGESPKVSPPSHKASPPPSDSQSPPSDNSPPPRSTVPSPPSSVPSSSAPPPVSDPGSPTNSSGGTPVTPPTSVTPERPIATINGTNVTANNSTTSKGGFSTGASVAVGSVVGVLVLSLVIMALWFVQKRKRRKKNIPYTIASPFSSQNSDSLFLRPHSSAPVVGSRTDSDFKYSSSEGGGVGNSRSFAYDDLHQATSGFSSNNLLGEGGFGCVYKGTLADGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGENRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLDNNYVDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEQSAQIRMFQRMAFGSQDYSYGYSERDRSRSYSQSHSNWSRESRDQSPSAPMNRSRQWNI 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6992725 6998631 + CaPI482276_11g005520.1 Cam11g0552 139474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0552 779 MobiDBLite consensus disorder prediction 752 779 - -
Cam11g0552 779 MobiDBLite consensus disorder prediction 54 279 - -
Cam11g0552 779 MobiDBLite consensus disorder prediction 1 315 - -
Cam11g0552 779 SUPERFAMILY Protein kinase-like (PK-like) 405 695 IPR011009 -
Cam11g0552 779 MobiDBLite consensus disorder prediction 742 779 - -
Cam11g0552 779 SMART serkin_6 422 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0552 779 Gene3D Transferase(Phosphotransferase) domain 1 498 710 - -
Cam11g0552 779 ProSiteProfiles Protein kinase domain profile. 422 683 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0552 779 MobiDBLite consensus disorder prediction 12 53 - -
Cam11g0552 779 ProSitePatterns Protein kinases ATP-binding region signature. 428 450 IPR017441 GO:0005524(InterPro)
Cam11g0552 779 CDD STKc_IRAK 428 698 - -
Cam11g0552 779 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 304 731 IPR047117 -
Cam11g0552 779 FunFam Proline-rich receptor-like protein kinase PERK8 395 497 - -
Cam11g0552 779 Gene3D Phosphorylase Kinase; domain 1 393 497 - -
Cam11g0552 779 FunFam proline-rich receptor-like protein kinase PERK8 498 710 - -
Cam11g0552 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g0552 779 MobiDBLite consensus disorder prediction 280 315 - -
Cam11g0552 779 Pfam Protein tyrosine and serine/threonine kinase 425 695 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2197 Cam-Chr2:34720442 Cam11g0552 Cam-Chr11:6992725 6.60E-66 dispersed
Cam05g2521 Cam-Chr5:33057827 Cam11g0552 Cam-Chr11:6992725 4.70E-149 dispersed
Cam06g0325 Cam-Chr6:5327745 Cam11g0552 Cam-Chr11:6992725 2.90E-66 dispersed
Cam09g2283 Cam-Chr9:37299108 Cam11g0552 Cam-Chr11:6992725 1.90E-78 dispersed
Cam10g2256 Cam-Chr10:35750819 Cam11g0552 Cam-Chr11:6992725 1.80E-71 dispersed
Cam11g0096 Cam-Chr11:2623725 Cam11g0552 Cam-Chr11:6992725 2.20E-72 dispersed
Cam11g0470 Cam-Chr11:6176088 Cam11g0552 Cam-Chr11:6992725 4.30E-123 dispersed
Cam11g0535 Cam-Chr11:6812927 Cam11g0552 Cam-Chr11:6992725 1.10E-72 dispersed
Cam11g0552 Cam-Chr11:6992725 Cam11g1891 Cam-Chr11:31474564 1.60E-78 dispersed
Cam11g1328 Cam-Chr11:25986233 Cam11g0552 Cam-Chr11:6992725 7.30E-66 dispersed
Cam05g2732 Cam-Chr5:34626069 Cam11g0552 Cam-Chr11:6992725 4.30E-140 transposed
Cam11g1374 Cam-Chr11:26437623 Cam11g0552 Cam-Chr11:6992725 1.80E-43 transposed
Cam11g0552 Cam-Chr11:6992725 Cam07g1650 Cam-Chr7:31067558 2.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85563 PF07714 PK_Tyr_Ser-Thr 1.40E-45 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0552 - - - 0.0