Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0583 ATGACGCCATTTGAAGCTCTTTATGGAAAGAGTTGCATGTCGTTTGTTTATTGGCATGAGGTGGGTATTCCAACTACTAATGAGGCTATCCAGAAAAGTAAACCGTGCGACACCCCCCTTCTCGCGAGTTTTCCCTCGCCACACGCTGCGCCGCACGAAGCTTCTCCGCCCACCGCCGCCGATCGCTTGCCTCCTGGCCTCCGTCCTCGCCGCCGTCTTCGATCGCCGGCCGTCCAAGCACAGCTGTTCTTTGGAGATTGTTCCGGACGTTCGCCACTATTTGAAGCGACCGGAGAACTACTAGGAAAACCAAATACCATGGCGGATCTCATTCCACCACCACATAGATCGGCCAACGACTTCTTTTCCGATCCACTTGATTCTCATCCTCTCTGGTTCAAGCCCGACCTATTTCTCTCCCCGAATTTTGATTCCGAGTCCTACATATCTGAGCTTCGAACATTTGTCCCATTTGACACTCTCCGATCTCAGCTCCACTCTCATCTTTCCGCTCTGAACCGTGAGCTCATTGACTTGATCAATCGTGATTATACCGATTTTGTCAACCTGAGCACAAAGCTGGTCGATGTGGAAGCGGCAGTCGTACGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAGCAATTCAGGGGTTCCGTGGAGTTTTCTCTATCAGCTTTGCAGAATGGATTGCGGCAGAGATCAGAGGCAGCATCGGCCAGAGAGGTCTTGGAATTGTTGCTCGATACATTTCACGTCGTCTCGAAGGTTGAAAAACTGATCAAGGAGCTTCCAAGTGCCCCTGCTGATGGCTCAAACGGAACCATGAATTTAACAGATAAAAGTGCATTAAGTAATGGTGCTTCTTTACCACACATGGAGAACGGAACAAATCTTAGAGAAACACAGAGTATGCTCTTGGAAAGAATTTCCAGTGAAATGAATCGGCTGAAATTTTACATCGCTCATGCACAGGATCTTCCCTTCATTCAAAATATGGACAAGAGGATTCAGAGTGCCAGCCTGTTGCTGGACACGAGCTTGGGACATTGTTTTGTTGATGGACTTGCACATCATGATGAAAATGCTATTTACAATTGCCTACGTGCCTATGCTGCCATAGATAACACCACAAGTGCAGAAGAAATTTTTCGCAGTACTGTTGTATCACCAGCAATTCATAAAGTTTTTCCACATAGAGTTTCTGGCATGGATGCTGGATCATCTGATGATGATTTGGAGAATGATTACAAGCAAATGAAGCAATATATTGATAAAGACTGCAAATTTTTGTTAGAAATATCTGCTACAGAAAACTCAGGACTACATGTATTTGATTTCTTGGCTAATTCAATCCTGAAAGAGGTTCTCTCTGCTATCCAAAAGGCAAAACCAGGTGCATTTTCCCCAGGAAGACCTACTGAATTCTTAAAGAACTACAAGTCGAGCCTTGATTTCTTGGCGTACTTGGAAGGCTATTGTCCATCCAGATCTGCTGTTGCTAAATTTCGAGCTGCATCTGTGTATAATGAGTTCATGAAGCAATGGAATATTGGGGTTTATTTTTCTCTGAGGCTTCAGGAAATAGCTGGGGCTTTGGATTCGTCCCTTTCAGCACCCATTCTAACCCCCATACAAACTTCATCTTCTGGCGGGGGAAATAATCAGGATCTAACATTAAAGCAGAGTGTGATGCTTTTAGACTGTCTGACAGCATGCTGGAGAGATGATGTTCTCGTCCTTTCTTGTTCTGACAAGTTTCTTCGTCTATCTTTGCAGCTCCTTTCAAGATACTCCAACTGGTTGTCATCTGGTCTAGCTGCCCGTAAGACGGGGACAGGCTCCCATCCAGGTTCTGAATGGGCTGTAGCAGCTGCCCCAGATGATTTGATATATATAATCCATGACCTTGGTTATCTAGCCACGGTGGTAGCTGGTAATTTTTTGGAAACTGTACTTCAGCTCCTATCGTCATGCCCTGCAGATGTTCTCGATTCAGTAAAGCAGAGCATTTTGCACAGTGGAAAGTCATTGAATAATTTAATGCCCAAAGTTATTGGTGCCATAGTTGCTTCACTGGTTGAGAAGTCTGTTGAGGACTTGAGACAGCTGAAGGGTATAACAGCAACATACAGGATGACCAATAAACCACTACCTGTAAGGCATTCACCCTATGTATCAGGGTTGCTACGCCCCTTAAAGGCCTTATTGGATGGAGAGAGGGCGTCATCTTTTTTGACAACGGAAACAAGGAATGCACTGCTGATCGATGCTATGACAGAGATTACTGCTCGTTATTACGAGCAAGCAGCTGATCTTGTTAGCTTGGCTAGGAAAACAGATTCGTCACTCCAGAAAATCCGGCAGGGAGTACAAAGACGAGCTGGAGCAAGCTCAGATGTTTCAGACCATAACATCTCTGACACTGACAAGATTTGCATGCAACTCTTTCTTGATATTCAGGAGTATGGTCGCAACCTTTCAGCCCTTGGGGTTGAAGCAGCGACACACCGCCCGCTGCTACAAAACTCCATCTCGAGAGAGAAATCGGATCACTTTGAAATGGCGGTCGCTTTCCATGATGTCAAGTCTGCAGCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGATGTTACCGTTTATGAAGCGATCTCCAAACCCGTTTCCAGTGAATATGTTAACGTGTCTAGGTGGAGTAATCACATTGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGTGTTAAGTTTGATGCAGTTGCAACCCCACCAGCTGCAGATGCAAAGGCTGCTGATGACGATGATGACGACGACATGGACCTATTTGGTGAAGAGACCGAAGAGGAAAAGAAGGCTGCTGAAGAGCGTGCAGCTGCCATTAAGGCTTCTGCAAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGACATCAAACCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGTGTTCAGATGGAAGGCTTGCTTTGGGGAGCATCGAAACTCGTCCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTAGCTGTGACATCGTGGCCTTCAACAAAATATAATTTCTGTTCGTCAGAACCAAAGACAGCTGGTTTCAAAGATGTTGCTGAGTCTGAGGAAGATGTTTAG 3243 45.3 MTPFEALYGKSCMSFVYWHEVGIPTTNEAIQKSKPCDTPLLASFPSPHAAPHEASPPTAADRLPPGLRPRRRLRSPAVQAQLFFGDCSGRSPLFEATGELLGKPNTMADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAPADGSNGTMNLTDKSALSNGASLPHMENGTNLRETQSMLLERISSEMNRLKFYIAHAQDLPFIQNMDKRIQSASLLLDTSLGHCFVDGLAHHDENAIYNCLRAYAAIDNTTSAEEIFRSTVVSPAIHKVFPHRVSGMDAGSSDDDLENDYKQMKQYIDKDCKFLLEISATENSGLHVFDFLANSILKEVLSAIQKAKPGAFSPGRPTEFLKNYKSSLDFLAYLEGYCPSRSAVAKFRAASVYNEFMKQWNIGVYFSLRLQEIAGALDSSLSAPILTPIQTSSSGGGNNQDLTLKQSVMLLDCLTACWRDDVLVLSCSDKFLRLSLQLLSRYSNWLSSGLAARKTGTGSHPGSEWAVAAAPDDLIYIIHDLGYLATVVAGNFLETVLQLLSSCPADVLDSVKQSILHSGKSLNNLMPKVIGAIVASLVEKSVEDLRQLKGITATYRMTNKPLPVRHSPYVSGLLRPLKALLDGERASSFLTTETRNALLIDAMTEITARYYEQAADLVSLARKTDSSLQKIRQGVQRRAGASSDVSDHNISDTDKICMQLFLDIQEYGRNLSALGVEAATHRPLLQNSISREKSDHFEMAVAFHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYEAISKPVSSEYVNVSRWSNHIEALLRVSAVFGEGSGVKFDAVATPPAADAKAADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVAVTSWPSTKYNFCSSEPKTAGFKDVAESEEDV 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7361155 7379217 + CaPI482276_11g005830.1 Cam11g0583 139505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0583 1080 SMART EF1_GNE_2 989 1079 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cam11g0583 1080 MobiDBLite consensus disorder prediction 948 962 - -
Cam11g0583 1080 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 953 961 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Cam11g0583 1080 SUPERFAMILY GST C-terminal domain-like 864 925 IPR036282 -
Cam11g0583 1080 FunFam Elongation factor 1-delta 1 859 934 - -
Cam11g0583 1080 Gene3D - 982 1065 IPR014717 -
Cam11g0583 1080 MobiDBLite consensus disorder prediction 942 966 - -
Cam11g0583 1080 Pfam COG2 N-terminal 131 205 IPR024602 -
Cam11g0583 1080 FunFam Elongation factor 1-beta 1 like 983 1060 - -
Cam11g0583 1080 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2 117 839 IPR009316 GO:0006891(PANTHER)|GO:0007030(PANTHER)|GO:0007030(InterPro)|GO:0015031(InterPro)|GO:0016020(InterPro)|GO:0017119(PANTHER)
Cam11g0583 1080 Coils Coil 961 981 - -
Cam11g0583 1080 Gene3D - 838 931 - -
Cam11g0583 1080 SUPERFAMILY eEF-1beta-like 986 1051 IPR036219 -
Cam11g0583 1080 Pfam EF-1 guanine nucleotide exchange domain 991 1050 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cam11g0583 1080 MobiDBLite consensus disorder prediction 41 70 - -
Cam11g0583 1080 Pfam COG complex component, COG2, C-terminal 516 822 IPR024603 -
Cam11g0583 1080 CDD EF1B 987 1048 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0583 K20289 - csv:101215350 1371.68