Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0589 ATGAAAAGGCTACTGGGGTTGTTCTTCTTGTTCGTTGTGGTTCCAGTGTTGGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAGGCTGACATTGAAGATCCTAAAGGGAAACTTGCTTCGTGGAATGAAGATGACGATAACCCATGTAATTGGGTTGGTGTAAAATGCAACCCCAGATCCAATAGAGTTGTTGAGCTCAATCTTGATGGCTTTTCTCTCAATGGCAGGCTTGGCCGTGGTCTTCTTCAGTTGCAGTTTCTTCGTAAACTCTCTCTTTCGAACAACAATCTTACTGGAAATTTAAGTCCTAATAATGCTCGCTTTGAAAATCTTCGAGTGGTCGATTTAAGCGGCAACGGTTTTCATGGGATGATTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAAGAACAAATTTTCAGGGAAAATCCCGGAAAGTTTGGGCTCTTGTTCCAGTCTTGCTGCTGTTAATTTGTCTTCTAATCAGTTTTCAGGTTCATTGCCTTCTGGGATTTGGTCCTTGACCGGGCTTCGATCTTTGGATTTGTCTGATAATGTGTTAGAAGGTGAAATTCCACCGGAAGTGAAGGGTATGAATAATTTGCGAGCTATTAATTTGGGGAAGAATCGGTTTTCTGGACAGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGTGACGTTCCGGCGACAATGCAGAAGCTTAGTTTATGCAGTACTCTTAATTTAAGAAGAAACTCATTTGAAGGGAAGGTTCCTGAATGGATTGGTGGAATGGATGGCCTTGAAATCTTGGACCTTTCTGGGAATAGATTTTCTGGTCCGGTTCCAAGTTCATTTGGGAATCTTCAAAAACTGAAGGTTTTGAATTTTTCTGAAAATGGTTTAACTGGTAGCTTGGCTGAATCCATACTTCCTTCTCAAAACCTTTCAGCCATGGAGCCCGGCCGTGGTTCTCTCACTGGTGTTCTTCCGGCCTGGATTCTGAAGCTGGGTTCGCAAAATGTATTGCCTTCTGATATCAAAAGAAGCTCTCTTTCTACAACTGTGGGAAAAGCTCTTGTTAATCTTCAAGTTTTAGATTTGTCTCACAATGCACTTTCTGGTGAAATTTCACCTGATATTGGGATATTAAGTAACTTGCAGGTGTTAAACCTGTGTAAGAACTCATTTGTTGGGACTGTTCCAGAGAGTATTGGAGGCTTGAAGGCCTTGGTTTTTCTTGACTTGAGTGAGAACCAGTTGAATGGAACCATTCCCGAAACACTCGGCGGAGACATATCATTGAAAGAAGTGAGACTGGAGAAGAACTTGCTGGAGGGTGAAGTTCCAAAATCAATTGGGAACTGTTCTTCACTTGTAACTTTGGACATATCGGAAAACAGATTAACTGGCTCCATACCAGCAGAATTGTCTCAACTGATCAATCTCCAAATTGTGGACTTGTCAACAAACAATCTCAGTGGTGCACTGCCAAAACAGTTGGCCAATCTTCCTAACCTTCTTTTGTTTAACATTTCTCACAACAATCTGCAAGGCGAACTGCCTGCAGGTGGCTTTTTCAATACAATCTCTCCTTCCTCTGTGGCTGGAAATCCTTCCATTTGTGGTTCTATTGTCAAGAAGTCTTGCCCTGGCGTCCTCCCAAAGCCTATTGTTCTCAATCCCAACTCATCTTCTGACTCTGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAGAATCATCCTCAGCATCTCTGCACTCATTGCTATTGGTGCAGCTGCTGTTATCCTCGTCGGTGTAGTTGCAATCACCGTCATTAACCTCCATGTTCGATCGTCTGCAAATCGTCCTGAAGCAGCCATCACGTTCTCAGGAGGGGATGACTTCAGCCACTCCCCAACTACGGATGCTAATTCTGGCAAGCTCGTCATGTTCTCGGGAGAGCCTGACTTTAGTACCGGTGCACATGCCCTCCTTAACAAGGATTGTGAGCTTGGCCGTGGTGGATTTGGAGCGGTTTACCAGACTGTTCTTCGTGATGGGCATCCGGTTGCAATAAAAAAGCTCACCGTTTCAAGTCTTGTCAAATCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAGTTGGGGAAGGTTAGGCACCAAAATCTTGTGGCTCTAGAAGGTTATTACTGGACACCATCTCTACAGCTCCTCATATATGAATTTGTTTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGATTGGGTGGAAACATCCTCTCATGGAATGAAAGGTTCAACATAATCCTTGGAACTGCGAAAAGCTTGGCACATTTGCACCAAATGAACATCATCCACTACAATATAAAATCAAGCAATGTCCTGATTGATAGTTCAGGTGAACCTAAAGTTGGAGATTTTGGCCTAGCAAGATTGTTACCAATGCTTGATCGGTACGTGTTGAGCAGCAAGATACAGAGCGCACTCGGATACATGGCACCCGAGTTTGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTGTATGGGTTTGGAGTTCTGGTTCTTGAGGTGGTAACTGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTGGTGGTACTCTGCGACATGGTTCGACGGGCGCTGGAAGAAGGTCGGGTAGAGGAATGCATTGATGGGAGGCTCCAGAGGAATTTTCCATCAGAGGAGGCCATACCAGTAGTGAAACTAGGCTTGATTTGCACTTCTCAGGTGCCATCAAACCGACCTGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATAA 2895 44.08 MKRLLGLFFLFVVVPVLVRSLNPPLNDDVLGLIVFKADIEDPKGKLASWNEDDDNPCNWVGVKCNPRSNRVVELNLDGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRVVDLSGNGFHGMIPDDFFRQCGSLRVISLAKNKFSGKIPESLGSCSSLAAVNLSSNQFSGSLPSGIWSLTGLRSLDLSDNVLEGEIPPEVKGMNNLRAINLGKNRFSGQIPDGIGSCLLLRSVDLSENSFSGDVPATMQKLSLCSTLNLRRNSFEGKVPEWIGGMDGLEILDLSGNRFSGPVPSSFGNLQKLKVLNFSENGLTGSLAESILPSQNLSAMEPGRGSLTGVLPAWILKLGSQNVLPSDIKRSSLSTTVGKALVNLQVLDLSHNALSGEISPDIGILSNLQVLNLCKNSFVGTVPESIGGLKALVFLDLSENQLNGTIPETLGGDISLKEVRLEKNLLEGEVPKSIGNCSSLVTLDISENRLTGSIPAELSQLINLQIVDLSTNNLSGALPKQLANLPNLLLFNISHNNLQGELPAGGFFNTISPSSVAGNPSICGSIVKKSCPGVLPKPIVLNPNSSSDSGSPSLPSTLGHKRIILSISALIAIGAAAVILVGVVAITVINLHVRSSANRPEAAITFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGRVEECIDGRLQRNFPSEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7435909 7439024 + CaPI482276_11g005890.1 Cam11g0589 139511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0589 964 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515(InterPro)
Cam11g0589 964 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515(InterPro)
Cam11g0589 964 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515(InterPro)
Cam11g0589 964 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 675 757 - -
Cam11g0589 964 PRINTS Leucine-rich repeat signature 192 205 - -
Cam11g0589 964 PRINTS Leucine-rich repeat signature 380 393 - -
Cam11g0589 964 SUPERFAMILY RNI-like 267 549 - -
Cam11g0589 964 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 26 304 - -
Cam11g0589 964 SMART LRR_typ_2 428 452 IPR003591 -
Cam11g0589 964 SMART LRR_typ_2 213 237 IPR003591 -
Cam11g0589 964 SMART LRR_typ_2 500 523 IPR003591 -
Cam11g0589 964 SMART LRR_typ_2 380 404 IPR003591 -
Cam11g0589 964 SMART LRR_typ_2 189 212 IPR003591 -
Cam11g0589 964 SMART LRR_typ_2 285 308 IPR003591 -
Cam11g0589 964 SMART LRR_typ_2 116 140 IPR003591 -
Cam11g0589 964 SMART LRR_typ_2 524 548 IPR003591 -
Cam11g0589 964 SMART LRR_typ_2 309 333 IPR003591 -
Cam11g0589 964 Gene3D Ribonuclease Inhibitor 286 573 IPR032675 -
Cam11g0589 964 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 758 959 - -
Cam11g0589 964 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524(InterPro)
Cam11g0589 964 SUPERFAMILY Protein kinase-like (PK-like) 684 954 IPR011009 -
Cam11g0589 964 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Cam11g0589 964 Pfam Leucine Rich Repeat 192 212 IPR001611 GO:0005515(InterPro)
Cam11g0589 964 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515(InterPro)
Cam11g0589 964 Pfam Leucine Rich Repeat 502 524 IPR001611 GO:0005515(InterPro)
Cam11g0589 964 Pfam Leucine Rich Repeat 478 500 IPR001611 GO:0005515(InterPro)
Cam11g0589 964 Pfam Leucine Rich Repeat 95 111 IPR001611 GO:0005515(InterPro)
Cam11g0589 964 Pfam Protein tyrosine and serine/threonine kinase 683 949 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g0589 964 SUPERFAMILY L domain-like 44 354 - -
Cam11g0589 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 279 953 IPR051564 GO:0016020(PANTHER)
Cam11g0589 964 CDD STKc_IRAK 687 953 - -
Cam11g0589 964 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
Cam11g0589 964 Gene3D Ribonuclease Inhibitor 182 281 IPR032675 -
Cam11g0589 964 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 305 574 - -
Cam11g0589 964 ProSiteProfiles Protein kinase domain profile. 681 953 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0589 964 Gene3D Phosphorylase Kinase; domain 1 674 757 - -
Cam11g0589 964 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g0589 Cam-Chr11:7435909 Cam01g1487 Cam-Chr1:28427222 4.60E-51 dispersed
Cam07g1598 Cam-Chr7:30651384 Cam11g0589 Cam-Chr11:7435909 7.10E-26 transposed
Cam10g0328 Cam-Chr10:5430845 Cam11g0589 Cam-Chr11:7435909 4.80E-87 transposed
Cam10g2243 Cam-Chr10:35656857 Cam11g0589 Cam-Chr11:7435909 1.80E-185 wgd
Cam11g0589 Cam-Chr11:7435909 Cam07g0523 Cam-Chr7:7616067 1.20E-192 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85564 PF00069 Pkinase 3.00E-41 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0589 - - - 0.0