Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0593 ATGGCCATCTCACCATTCTCTTCTCTTTCAATCTTCTTCCTTATTTTCCTTCCTGCAATCTCAGCCGATTACGGCCACGCCACCTTCTATGGCGGCGGAGACGCTTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGGACGAACACGGCGGCGCTAAGTACTGCTCTGTTCAACAATGGGCTGAGCTGTGGCTCTTGTTATGAAATCACTTGCAATAGTGATCCTAAATGGTGTCTTCCTGGAAAAATCATCGTCACTGCCACTAATTTCTGTCCACCAAACTTTGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTGCAGCACTTCGACTTGGCGGAGCCGGCTTTTCTCCAAATCGCTCAATACCGTGCAGGAATCGTCCCTGTTTCCTTCCAAAGAGTACCATGTATGAAGAAGGGAGGAATCAGATTCACCATTAACGGACATTCATACTTCAACTTGGTTCTGATCACCAACGTGGGCGGCGCCGGCGACGTTCACTCAGTGTCGATCAAAGGTTCGAAAACAGGATGGCAAGCCATGTCCAGAAATTGGGGACAGAATTGGCAGAGCAACAATTACTTGAACGGACAGAGTCTCTCTTTCCAAGTCACCACCAGCGACGGCCGTACCGTCACCAGCTACGACGCCGTTCCGGCCAACTGGCAGTTTGGCCAGACGTTCGAGGGAAGCCAATTCTAA 735 51.02 MAISPFSSLSIFFLIFLPAISADYGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFQRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPANWQFGQTFEGSQF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7488743 7489687 + CaPI482276_11g005930.1 Cam11g0593 139515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0593 244 Pfam Lytic transglycolase 57 142 IPR009009 -
Cam11g0593 244 SMART dpbb_1 57 142 IPR007112 -
Cam11g0593 244 CDD DPBB_EXPA_N 25 147 - -
Cam11g0593 244 Gene3D - 19 148 IPR036908 -
Cam11g0593 244 PANTHER EXPANSIN-A15 12 244 IPR002963 GO:0009664(InterPro)
Cam11g0593 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Cam11g0593 244 FunFam Expansin 152 244 - -
Cam11g0593 244 Gene3D - 151 244 IPR036749 -
Cam11g0593 244 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576(InterPro)
Cam11g0593 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576(InterPro)
Cam11g0593 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Cam11g0593 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576(InterPro)
Cam11g0593 244 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cam11g0593 244 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cam11g0593 244 PRINTS Expansin signature 91 101 IPR002963 GO:0009664(InterPro)
Cam11g0593 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664(InterPro)
Cam11g0593 244 PRINTS Expansin signature 52 66 IPR002963 GO:0009664(InterPro)
Cam11g0593 244 PRINTS Expansin signature 79 90 IPR002963 GO:0009664(InterPro)
Cam11g0593 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664(InterPro)
Cam11g0593 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664(InterPro)
Cam11g0593 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664(InterPro)
Cam11g0593 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664(InterPro)
Cam11g0593 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664(InterPro)
Cam11g0593 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Cam11g0593 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Cam11g0593 244 SUPERFAMILY Barwin-like endoglucanases 12 170 IPR036908 -
Cam11g0593 244 FunFam Expansin 19 148 - -
Cam11g0593 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2614 Cam-Chr5:33721645 Cam11g0593 Cam-Chr11:7488743 4.60E-112 dispersed
Cam07g0755 Cam-Chr7:18214357 Cam11g0593 Cam-Chr11:7488743 1.20E-73 dispersed
Cam08g1885 Cam-Chr8:24843661 Cam11g0593 Cam-Chr11:7488743 1.30E-93 dispersed
Cam10g0338 Cam-Chr10:5511833 Cam11g0593 Cam-Chr11:7488743 1.80E-69 dispersed
Cam11g0593 Cam-Chr11:7488743 Cam11g0988 Cam-Chr11:17050594 1.80E-105 dispersed
Cam11g0593 Cam-Chr11:7488743 Cam07g0517 Cam-Chr7:7464474 9.70E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0593 - - - 0.0