Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0603 ATGTCAAGAGAAAGAGAATTGCAACAGGTCGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAAGTTTTTATGATCCATTAATGGGAAGAAGACATATTTTAAGTCCAAGTACTGGGACGACATTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCATATTTTTCTCCACATGAACCCCAAAAATTTGCTTCGGTTCATAAGGTTTTTGGTGCAAGCAACGTGGCTAAGATGCTAATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCTGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCGACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCATCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATTTCCTACTTTGGTTAA 687 42.65 MSRERELQQVDETGKKIKREIDQSFYDPLMGRRHILSPSTGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFTQHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTTAAPELINPISTTQHISYFG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7578519 7580967 + CaPI482276_11g006030.1 Cam11g0603 139525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0603 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 173 - -
Cam11g0603 228 MobiDBLite consensus disorder prediction 166 193 - -
Cam11g0603 228 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Cam11g0603 228 Pfam Lateral organ boundaries (LOB) domain 49 145 IPR004883 -
Cam11g0603 228 Coils Coil 128 148 - -
Cam11g0603 228 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0935 Cam-Chr5:8454470 Cam11g0603 Cam-Chr11:7578519 2.90E-29 dispersed
Cam11g0603 Cam-Chr11:7578519 Cam11g1136 Cam-Chr11:22193914 7.20E-35 dispersed
Cam11g0603 Cam-Chr11:7578519 Cam07g0499 Cam-Chr7:7063589 4.00E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52880 PF03195 LOB 1.90E-40 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0603 - - - 0.0