Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0603 | ATGTCAAGAGAAAGAGAATTGCAACAGGTCGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAAGTTTTTATGATCCATTAATGGGAAGAAGACATATTTTAAGTCCAAGTACTGGGACGACATTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCATATTTTTCTCCACATGAACCCCAAAAATTTGCTTCGGTTCATAAGGTTTTTGGTGCAAGCAACGTGGCTAAGATGCTAATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCTGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCGACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCATCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATTTCCTACTTTGGTTAA | 687 | 42.65 | MSRERELQQVDETGKKIKREIDQSFYDPLMGRRHILSPSTGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFTQHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTTAAPELINPISTTQHISYFG | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7578519 | 7580967 | + | CaPI482276_11g006030.1 | Cam11g0603 | 139525 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0603 | 228 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 47 | 173 | - | - | |
Cam11g0603 | 228 | MobiDBLite | consensus disorder prediction | 166 | 193 | - | - | |
Cam11g0603 | 228 | ProSiteProfiles | LOB domain profile. | 48 | 149 | IPR004883 | - | |
Cam11g0603 | 228 | Pfam | Lateral organ boundaries (LOB) domain | 49 | 145 | IPR004883 | - | |
Cam11g0603 | 228 | Coils | Coil | 128 | 148 | - | - | |
Cam11g0603 | 228 | MobiDBLite | consensus disorder prediction | 170 | 193 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g0935 | Cam-Chr5:8454470 | Cam11g0603 | Cam-Chr11:7578519 | 2.90E-29 | dispersed | |
Cam11g0603 | Cam-Chr11:7578519 | Cam11g1136 | Cam-Chr11:22193914 | 7.20E-35 | dispersed | |
Cam11g0603 | Cam-Chr11:7578519 | Cam07g0499 | Cam-Chr7:7063589 | 4.00E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52880 | PF03195 | LOB | 1.90E-40 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0603 | - | - | - | 0.0 |