Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0625 | ATGACACCAGAGACAATTGAGAGGAAGAGGAAGTCACGGAGTAGACGAGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTTTTGATTCTTGTAATGATGGAAGCAAGCCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGTAAGGGAGGACCCTTGAATTCACATTGCAATTACAGAGGTGTGAGACAGAGGACTTGGGGCAAATGGGTTGCAGAGATTCGTGAACCCAATAGGGGGAGTAGGCTTTGGCTTGGTACTTTCCCCACTGCCATTGAAGCTGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTACGGTCACAGTGCTCGTTTAAACCTTCCCAACATTAAAAACAGAGGGCAACTACAAGGGATTCTTCTGGAGGATTACTTGGGCCTGCGTAACTCGGATTCTTCAACTGCTACTTCAACATGTTCTGAATCTACGACCACGACGTCGAACCAATCTGAGGTCTGCGTGCCTGAGGAGTTCGCAAAGAGGCCACAGCTTGTGCCCTCAAACATTAAGATTGAAGATGGAGAAGGTGAATCGAGGACAGGGGATCACAGTGATGGCACTGCGACACCGATGCGCTTAGAGAATGAAGTGAAACATGAGGATTGCAATGATCGGGCAGCTGTATTAGGGACTGAGTTTCCTAGTTTGGATCAGTCGCAGAACTTTCCAATGGATGAAATGTTCGAGCCGAGGACCGGGAATCAGGCTGATCATATGGCGATGCCTATGAGCTTAGAGAAGCAAGTGAAGGATGAAGATCTTGATGCTGTATATCGTGATTGGAGCAATGACCAAGCAGTCTTACCAGAAGCCGGGATTTCTAGTCTTAATAATTTACAGAACTTTCAAATGGATGAAATGTTTGATGTGGAAGAGCTCCTAAACCTGATAAGTAGTGATTCCTTGTATGATCCAACAACAAACATCTTGAAGGGCAATGCAGATGGTTACACTAACGTAGCGCCTTCACAAGTTAGCAATCTTGGGTCTGAGAAGCCGTCAAGTTGGTCATACCAATTCCAAAATCCCGGAGCGAAGCTGCTCGGAAGTCTCCAACAGACGGAGCAAGCGCCGGCGGATGTAGACTATGGATTTGATTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCCGCAGCAGATGATTGTGTTAGATACCTGAACGAGATGGGTGATTTAGGTTTCTAA | 1245 | 46.91 | MTPETIERKRKSRSRRDRSTVAETLAKWKAYNECFDSCNDGSKPIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGHSARLNLPNIKNRGQLQGILLEDYLGLRNSDSSTATSTCSESTTTTSNQSEVCVPEEFAKRPQLVPSNIKIEDGEGESRTGDHSDGTATPMRLENEVKHEDCNDRAAVLGTEFPSLDQSQNFPMDEMFEPRTGNQADHMAMPMSLEKQVKDEDLDAVYRDWSNDQAVLPEAGISSLNNLQNFQMDEMFDVEELLNLISSDSLYDPTTNILKGNADGYTNVAPSQVSNLGSEKPSSWSYQFQNPGAKLLGSLQQTEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNEMGDLGF | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7791580 | 7793405 | + | CaPI482276_11g006250.1 | Cam11g0625 | 139547 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0625 | 414 | CDD | AP2 | 69 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0625 | 414 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 7 | 314 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cam11g0625 | 414 | Gene3D | AP2/ERF domain | 70 | 128 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0625 | 414 | ProSiteProfiles | AP2/ERF domain profile. | 70 | 127 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0625 | 414 | FunFam | Ethylene-responsive transcription factor 2 | 69 | 128 | - | - | |
Cam11g0625 | 414 | MobiDBLite | consensus disorder prediction | 150 | 171 | - | - | |
Cam11g0625 | 414 | PRINTS | Ethylene responsive element binding protein signature | 93 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0625 | 414 | PRINTS | Ethylene responsive element binding protein signature | 71 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0625 | 414 | SUPERFAMILY | DNA-binding domain | 70 | 127 | IPR016177 | GO:0003677(InterPro) | |
Cam11g0625 | 414 | SMART | rav1_2 | 70 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0625 | 414 | MobiDBLite | consensus disorder prediction | 189 | 208 | - | - | |
Cam11g0625 | 414 | Pfam | AP2 domain | 70 | 120 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g2040 | Cam-Chr5:29094288 | Cam11g0625 | Cam-Chr11:7791580 | 2.50E-30 | dispersed | |
Cam08g1938 | Cam-Chr8:25311245 | Cam11g0625 | Cam-Chr11:7791580 | 2.20E-30 | dispersed | |
Cam10g1679 | Cam-Chr10:30792010 | Cam11g0625 | Cam-Chr11:7791580 | 2.70E-25 | dispersed | |
Cam11g0625 | Cam-Chr11:7791580 | Cam11g1563 | Cam-Chr11:28432388 | 5.30E-20 | dispersed | |
Cam11g0625 | Cam-Chr11:7791580 | Cam11g0633 | Cam-Chr11:7868784 | 1.80E-20 | proximal | |
Cam02g1166 | Cam-Chr2:22880511 | Cam11g0625 | Cam-Chr11:7791580 | 2.10E-49 | transposed | |
Cam11g0625 | Cam-Chr11:7791580 | Cam04g0679 | Cam-Chr4:21077689 | 1.90E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52882 | PF00847 | AP2 | 4.10E-15 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0625 | K09286 | - | csv:101215431 | 647.121 |