Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0625 ATGACACCAGAGACAATTGAGAGGAAGAGGAAGTCACGGAGTAGACGAGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTTTTGATTCTTGTAATGATGGAAGCAAGCCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGTAAGGGAGGACCCTTGAATTCACATTGCAATTACAGAGGTGTGAGACAGAGGACTTGGGGCAAATGGGTTGCAGAGATTCGTGAACCCAATAGGGGGAGTAGGCTTTGGCTTGGTACTTTCCCCACTGCCATTGAAGCTGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTACGGTCACAGTGCTCGTTTAAACCTTCCCAACATTAAAAACAGAGGGCAACTACAAGGGATTCTTCTGGAGGATTACTTGGGCCTGCGTAACTCGGATTCTTCAACTGCTACTTCAACATGTTCTGAATCTACGACCACGACGTCGAACCAATCTGAGGTCTGCGTGCCTGAGGAGTTCGCAAAGAGGCCACAGCTTGTGCCCTCAAACATTAAGATTGAAGATGGAGAAGGTGAATCGAGGACAGGGGATCACAGTGATGGCACTGCGACACCGATGCGCTTAGAGAATGAAGTGAAACATGAGGATTGCAATGATCGGGCAGCTGTATTAGGGACTGAGTTTCCTAGTTTGGATCAGTCGCAGAACTTTCCAATGGATGAAATGTTCGAGCCGAGGACCGGGAATCAGGCTGATCATATGGCGATGCCTATGAGCTTAGAGAAGCAAGTGAAGGATGAAGATCTTGATGCTGTATATCGTGATTGGAGCAATGACCAAGCAGTCTTACCAGAAGCCGGGATTTCTAGTCTTAATAATTTACAGAACTTTCAAATGGATGAAATGTTTGATGTGGAAGAGCTCCTAAACCTGATAAGTAGTGATTCCTTGTATGATCCAACAACAAACATCTTGAAGGGCAATGCAGATGGTTACACTAACGTAGCGCCTTCACAAGTTAGCAATCTTGGGTCTGAGAAGCCGTCAAGTTGGTCATACCAATTCCAAAATCCCGGAGCGAAGCTGCTCGGAAGTCTCCAACAGACGGAGCAAGCGCCGGCGGATGTAGACTATGGATTTGATTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCCGCAGCAGATGATTGTGTTAGATACCTGAACGAGATGGGTGATTTAGGTTTCTAA 1245 46.91 MTPETIERKRKSRSRRDRSTVAETLAKWKAYNECFDSCNDGSKPIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGHSARLNLPNIKNRGQLQGILLEDYLGLRNSDSSTATSTCSESTTTTSNQSEVCVPEEFAKRPQLVPSNIKIEDGEGESRTGDHSDGTATPMRLENEVKHEDCNDRAAVLGTEFPSLDQSQNFPMDEMFEPRTGNQADHMAMPMSLEKQVKDEDLDAVYRDWSNDQAVLPEAGISSLNNLQNFQMDEMFDVEELLNLISSDSLYDPTTNILKGNADGYTNVAPSQVSNLGSEKPSSWSYQFQNPGAKLLGSLQQTEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNEMGDLGF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7791580 7793405 + CaPI482276_11g006250.1 Cam11g0625 139547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0625 414 CDD AP2 69 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0625 414 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 314 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cam11g0625 414 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0625 414 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0625 414 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Cam11g0625 414 MobiDBLite consensus disorder prediction 150 171 - -
Cam11g0625 414 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0625 414 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0625 414 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677(InterPro)
Cam11g0625 414 SMART rav1_2 70 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0625 414 MobiDBLite consensus disorder prediction 189 208 - -
Cam11g0625 414 Pfam AP2 domain 70 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2040 Cam-Chr5:29094288 Cam11g0625 Cam-Chr11:7791580 2.50E-30 dispersed
Cam08g1938 Cam-Chr8:25311245 Cam11g0625 Cam-Chr11:7791580 2.20E-30 dispersed
Cam10g1679 Cam-Chr10:30792010 Cam11g0625 Cam-Chr11:7791580 2.70E-25 dispersed
Cam11g0625 Cam-Chr11:7791580 Cam11g1563 Cam-Chr11:28432388 5.30E-20 dispersed
Cam11g0625 Cam-Chr11:7791580 Cam11g0633 Cam-Chr11:7868784 1.80E-20 proximal
Cam02g1166 Cam-Chr2:22880511 Cam11g0625 Cam-Chr11:7791580 2.10E-49 transposed
Cam11g0625 Cam-Chr11:7791580 Cam04g0679 Cam-Chr4:21077689 1.90E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52882 PF00847 AP2 4.10E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0625 K09286 - csv:101215431 647.121