Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0646 ATGGTCGCGAGGTCTCTGTGGCGCGCCGGAGCGAAGGTCGCGATGGCAGCCACCGCCATGGGCGGTGGTGCTGCAGCGGCCTCCATAGCCACCTCCGACGACCCCTCTATGACTCTTAAGCTCTGCACCACCGTCCCGCTCCGCCTCGTTCGCCTTTCATACACAGTCGCTACCATCGCCGTCGATTATGAATATTCACTGTGGAGTTTGCCCGAAGGGAGTAGTGAGAGGGAGAAAGTTAAGCATGAAGTTCACCTTAGATCTGCACGTAGAATTCAAGAGTTATGCTTCAAGAATGGAGGAATATATATCAAGCTGGGTCAGCATATTGGTCAGTTGGAGTATTTGGTGCCCCAAGAATATGTCCAGATAATGAGAGAATATATGCTGAACAAATGTCCAGTATCCCCGTACAATCAAGTGTGTGAAGTGGTCAAGAGAGAGCTTGGTGAGACACCAGATAAGATCTTTTCTGAATTTAATCCTGATCCAATAGCTAGTGCTTCCCTTGCACAAGTGCATGTTGCTCGTACCCATGATGGGCAAAAAGTTGCTGTGAAGGTGCAGCATACTCATATGACAGATACTGCAGCTGCAGATCATGCTAGTGTTGCATTAATTGTGAACACCCTATATCGAGTTTTTCCTTCTGTTGATTATAGGTGGTTGGTTGATGAGATCAGTGAAAGTTTGCCAAAGGAACTTGATTTCTTAAACGAGGCCAGGAACAGTGAGAAATGTTTGGATAATTTTCGGAAGTTGTCTCCTCATATTGCGGACTATGTGTATGCTCCAAAGGTGTATTGGAACTTAAGTACCTCAAAGTTATTGACCATGGAGTTCATGGATGGTGCTCAAATAAATGATGTTAAATCCATTCAGAAGCTTGGGGTTCAACCGTCAGAAGTTGCAAAATTAGTTAGTCATGCATTTGCTGAGATGATATATAAGCATGGATTTGTACACTGTGACCCTCATGCTGCGAACTTGCTCGTCCGTCCCTTACCTTCTAATAGAAGGAGCATCTTTGGCAAGAGGAAGCCACAGTTAGTACTTTTGGATCATGGGCTGTATAAAGATCTTGACTTCAACATAAGATTTAACTATGCTTCCCTTTGGAAGGCCTTAATATTTTCTGATGCTGAAGCAATAAAGGAAAACAGTAAGAAATTGGGTGCTGGGGAAGATCTTTATGCGTTGTTTGCTGGAATTCTTACTATGAAACCTTGGAATCGAGTCATTGACCCAGCAGTTGACCATTTAGTCATTCAAGGAACTGACAATGAGCGTTCAGAATTACAGATGTATGCTTCAGAGTATTTCCCCCAAATCTCAGAGCTCCTCAGGAAATTACCACGTGTAATTTTGTTGATGCTGAAGACAAATGATTGTTTGAGGGCGGTTAACAATTCTCTGTTACAGGGATCTTCACTGGAGACATTCCTCATCATTGGGAAGGTATCCTCTGAAGCAGTTATCGAGGCAAAATTATCAGAAAATAAATCCTTCGCATCCGCCGATTCTCCCTGCTCAGTTCTTATTCTCCGGCGGCGACCACTCAGAAACTCAGGAGCAGTGGCGACGACCCACGCAACTAGACGTCGAGCGTTCGTCTTCTCCGGAGATGGCGACGGCCCAGACCACCGCGCAACAAAAGGGCAAAAGCATAATTTTATACAGCTGCTGACCTCAGCAAAAGAATATACAACCTTAATTTTAGAAACGGGTCCTATTTTATTTGAGCCCAAAATTTTGGGTAAAACAATCAAATTTCCCGCGCAACAAACCCAAACCCACGCGACGAGCGCGAGCAGCAGGATTTCTCCCTTCCGACAAGTTTCTCCTTCGGAGGACGACGAACCACCGACGACGGGTTTCCTCTGTCGGTTTGTGGTTCACGCGTCGATAACTGTCATTATCTTCCTTCCGGCGGGGCCCACCACGGCGGCCCGAGTACCCGCGACGAATGTGCAGCAGCGATTAACGCTTGTCTCAGTTGTGTTCCAAAAGGCAGTTAATGGAGTTGGAATCGATCCCAGTTCTGAAACAGATTCTGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCACAAGAGCTGCATCTTAGACAAGTGGCGGTTATGGGCTTACCTTCCTGTTTTAACCAAAGAACACGGCTGGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGATGCCCATTTTTCTATGAATTTGGATGCAAGATTGCACCTCTGGTTGGCGATAGAACGATTGGTTCTTGGCTTTTATCGACGTTCAAGAGTAGGTACAAGGAAGTTCTTACCAAGGCTCACACTGCAGTATTTGCTGCAAGTTCTAAATATTTGGCACTTCTGTCAAAAGAAGAAACCAAGATGTATGAAGCAGCTCAATCCTCTATGACAGCCTTCAAAAAATGGCGAATGGGTGGGCCTAGATTCCAGAAAGCATCCTTTCTAAGCAGGAAGAGGAAGTCATCTGAGTAG 2499 45.54 MVARSLWRAGAKVAMAATAMGGGAAAASIATSDDPSMTLKLCTTVPLRLVRLSYTVATIAVDYEYSLWSLPEGSSEREKVKHEVHLRSARRIQELCFKNGGIYIKLGQHIGQLEYLVPQEYVQIMREYMLNKCPVSPYNQVCEVVKRELGETPDKIFSEFNPDPIASASLAQVHVARTHDGQKVAVKVQHTHMTDTAAADHASVALIVNTLYRVFPSVDYRWLVDEISESLPKELDFLNEARNSEKCLDNFRKLSPHIADYVYAPKVYWNLSTSKLLTMEFMDGAQINDVKSIQKLGVQPSEVAKLVSHAFAEMIYKHGFVHCDPHAANLLVRPLPSNRRSIFGKRKPQLVLLDHGLYKDLDFNIRFNYASLWKALIFSDAEAIKENSKKLGAGEDLYALFAGILTMKPWNRVIDPAVDHLVIQGTDNERSELQMYASEYFPQISELLRKLPRVILLMLKTNDCLRAVNNSLLQGSSLETFLIIGKVSSEAVIEAKLSENKSFASADSPCSVLILRRRPLRNSGAVATTHATRRRAFVFSGDGDGPDHRATKGQKHNFIQLLTSAKEYTTLILETGPILFEPKILGKTIKFPAQQTQTHATSASSRISPFRQVSPSEDDEPPTTGFLCRFVVHASITVIIFLPAGPTTAARVPATNVQQRLTLVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVAVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRKRKSSE 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7987009 8000973 - CaPI482276_11g006460.1 Cam11g0646 139568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0646 832 CDD GINS_B_Psf3 662 713 - -
Cam11g0646 832 SUPERFAMILY PriA/YqbF domain 663 713 - -
Cam11g0646 832 MobiDBLite consensus disorder prediction 596 621 - -
Cam11g0646 832 ProSiteProfiles Protein kinase domain profile. 159 482 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0646 832 Gene3D - 657 814 IPR038437 -
Cam11g0646 832 SUPERFAMILY GINS helical bundle-like 712 813 IPR036224 -
Cam11g0646 832 Pfam GINS complex protein helical bundle domain 713 811 IPR021151 -
Cam11g0646 832 PANTHER ABC1 FAMILY PROTEIN 47 481 IPR051130 GO:0005743(PANTHER)|GO:0007005(PANTHER)|GO:0032592(PANTHER)|GO:0055088(PANTHER)
Cam11g0646 832 MobiDBLite consensus disorder prediction 596 612 - -
Cam11g0646 832 CDD ADCK1-like 129 392 IPR045307 -
Cam11g0646 832 Pfam ABC1 atypical kinase-like domain 130 387 IPR004147 -
Cam11g0646 832 SUPERFAMILY Protein kinase-like (PK-like) 134 333 IPR011009 -
Cam11g0646 832 CDD GINS_A_psf3 712 814 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1359 Cam-Chr5:14911768 Cam11g0646 Cam-Chr11:7987009 6.10E-64 dispersed
Cam09g1063 Cam-Chr9:10980069 Cam11g0646 Cam-Chr11:7987009 2.30E-25 dispersed
Cam11g0035 Cam-Chr11:1944792 Cam11g0646 Cam-Chr11:7987009 1.90E-18 dispersed
Cam11g0646 Cam-Chr11:7987009 Cam01g1735 Cam-Chr1:30934051 4.80E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0646 K08869 - csv:101216868 919.457