Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0658 ATGGCAACGACCGAGAACACAGTTTTGCAATTTTCACAGTCTTCCAACACTTTATCTGCGAAGGTTCATCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCGGACCAGGCTGATCGAGTCATTGGTACTCTTCTTGGCTCGGTTTTACCTGATGGAACCGTTGATATTCGTAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGCTGGATATTGACTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTACGGGAGTTACGGGTGGCAGTGCATTGATACATGAATTTTATTCAAGAGAAGTTGGAAACCCTATCCACCTGACTGTTGATACTGGATTTAAAAATGGTGAAGGGACGATTAAAGCTTATATCTCTGTCAATTTGTCCCTGGGAGATAGACAGCTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTCGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACGTCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCGTCAATGGAGAGATTGCTTGCCTTAATTGACGATATTTACAAATATGTTGATAACGTTGTGGAAGGACACGTTGAGGCAGACAACACGATAGGGAGATTTCTAGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCAGCTGCTTTTGATAAGCTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCCGGACACAACTGAGTTTGGCTGAAAAGTTGAATACGGCTGCTCAGATTCTGTAA 858 42.42 MATTENTVLQFSQSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVGNPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8150072 8152911 + CaPI482276_11g006580.1 Cam11g0658 139580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0658 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Cam11g0658 285 SMART pad1_6 19 150 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cam11g0658 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 14 281 - GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER)
Cam11g0658 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Cam11g0658 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cam11g0658 285 Pfam Maintenance of mitochondrial structure and function 172 279 IPR024969 -
Cam11g0658 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 122 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cam11g0658 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cam11g0658 285 FunFam Eukaryotic translation initiation factor 3 subunit F 8 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g2150 Cam-Chr10:35011709 Cam11g0658 Cam-Chr11:8150072 9.50E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0658 K03249 - csv:101205957 556.599