Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0671 ATGACGACGATCCAAAACTCCCACGTTGTCGCAATGGATGTAGAACGACAACAAGAACAAGAACGGCCTTCCCCACTTTCCGCCGCTCCCACTGACTCCTCACCGGCCTCCGATGATGTGCGGCGGTGCTCGGCCCAGTCCAGGGCTGACATTCTGGAGGAGGCGGTGGCGGAGAAAAGAAGGAGATCCTCTGTCTCGGATTGCTCTGTCGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCCGAGGCTTGGTTCAAGATAAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTCGACAGAGCAGCGCAATGAGTCAAACGAAGCAACAACAGCAACTGCTACAGCTGCTGTCGTGATGCCACTGCACTCTACAGAGGTTCGGAACTTCTGGCAGGGCCACAGGTTTATATTATATGATTGGGCTTTGTATTGTTTTAAAGAAAACAGACAGGTTGATGTTCGAAAAGATGCTGAAACGGCTGAGCCTAGCTGGATTGGCCATCTTGTCTCTTGTCGTCTCATTGTGGATAATTCTCTGTTGAGATTCCGACATGTAGTTCCTTCTATACCAACAAAATCGGATTTGGGTCTCAAAATAATTAATGTTAAAAACTGA 795 47.67 MTTIQNSHVVAMDVERQQEQERPSPLSAAPTDSSPASDDVRRCSAQSRADILEEAVAEKRRRSSVSDCSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNESNEATTATATAAVVMPLHSTEVRNFWQGHRFILYDWALYCFKENRQVDVRKDAETAEPSWIGHLVSCRLIVDNSLLRFRHVVPSIPTKSDLGLKIINVKN 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8343860 8346951 + CaPI482276_11g006710.1 Cam11g0671 139593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0671 264 MobiDBLite consensus disorder prediction 21 40 - -
Cam11g0671 264 SUPERFAMILY RING/U-box 89 146 - -
Cam11g0671 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 153 IPR013083 -
Cam11g0671 264 ProSiteProfiles Zinc finger RING-CH-type profile. 84 150 IPR011016 GO:0008270(InterPro)
Cam11g0671 264 SMART ringv_2 91 144 IPR011016 GO:0008270(InterPro)
Cam11g0671 264 PANTHER ZINC FINGER, RING-CH-TYPE 17 197 - -
Cam11g0671 264 Pfam RING-variant domain 92 143 IPR011016 GO:0008270(InterPro)
Cam11g0671 264 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2441 Cam-Chr1:36250973 Cam11g0671 Cam-Chr11:8343860 2.40E-16 dispersed
Cam11g0671 Cam-Chr11:8343860 Cam11g1695 Cam-Chr11:29639861 2.10E-09 dispersed
Cam04g0213 Cam-Chr4:7588609 Cam11g0671 Cam-Chr11:8343860 6.00E-09 transposed
Cam10g2129 Cam-Chr10:34863914 Cam11g0671 Cam-Chr11:8343860 1.80E-30 wgd
Cam11g0671 Cam-Chr11:8343860 Cam03g0101 Cam-Chr3:1996792 2.30E-29 wgd
Cam11g0671 Cam-Chr11:8343860 Cam04g0750 Cam-Chr4:21899487 2.50E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0671 - - - 0.0