Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0705 ATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGGGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCAAGGAGAAACTGATGCTTATATGGTTTAA 828 45.17 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8683472 8686200 + CaPI482276_11g007050.1 Cam11g0705 139627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0705 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Cam11g0705 275 SUPERFAMILY RING/U-box 208 262 - -
Cam11g0705 275 CDD RING-H2_PA-TM-RING 213 255 - -
Cam11g0705 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 260 IPR013083 -
Cam11g0705 275 MobiDBLite consensus disorder prediction 171 205 - -
Cam11g0705 275 Pfam Ring finger domain 213 255 IPR001841 -
Cam11g0705 275 SMART ring_2 214 254 IPR001841 -
Cam11g0705 275 MobiDBLite consensus disorder prediction 176 205 - -
Cam11g0705 275 PANTHER TARGET OF ERK KINASE MPK-1 2 258 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0253 Cam-Chr7:3652218 Cam11g0705 Cam-Chr11:8683472 1.80E-10 dispersed
Cam10g1782 Cam-Chr10:31897858 Cam11g0705 Cam-Chr11:8683472 4.10E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0705 K16283 - csv:101216306 502.286