Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0745 ATGGATCATCAGTTCCAAGAAGAAAGTAGTGTGAAAAAAACAAGTAGTGGATCTATGAAATCGGAGAAGAAGATAAGAAAAGGGAGATTTGCGTTTGAAACCAGGAGCCAAGTTGATGTGCTTGACGATGGCTATCGCTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACGACAAGTTTCCCAGGAGCTACTACAAGTGTTCACATCAAGGATGTAAAGTGAAGAAGCAAATTCAACGGCTTACAAATGATGAAGGAGTGGTATTAACAACCTACGAAGGAGTTCATTCCCATCCCATCGAAACCCCTCAAGATAACTTTCAACATATCTTGACTCACATGCAAATTTACCCTTCTTCCTTTTAA 366 39.62 MDHQFQEESSVKKTSSGSMKSEKKIRKGRFAFETRSQVDVLDDGYRWRKYGQKAVKNDKFPRSYYKCSHQGCKVKKQIQRLTNDEGVVLTTYEGVHSHPIETPQDNFQHILTHMQIYPSSF 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9273109 9274195 - CaPI482276_11g007450.1 Cam11g0745 139667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0745 121 SUPERFAMILY WRKY DNA-binding domain 34 100 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0745 121 ProSiteProfiles WRKY domain profile. 36 101 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0745 121 SMART WRKY_cls 41 100 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0745 121 Pfam WRKY DNA -binding domain 42 99 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0745 121 Gene3D WRKY domain 25 101 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0745 121 FunFam WRKY transcription factor 57 27 101 - -
Cam11g0745 121 MobiDBLite consensus disorder prediction 1 25 - -
Cam11g0745 121 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 104 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1566 Cam-Chr7:30354969 Cam11g0745 Cam-Chr11:9273109 2.40E-44 dispersed
Cam11g0481 Cam-Chr11:6338641 Cam11g0745 Cam-Chr11:9273109 2.80E-23 dispersed
Cam11g0745 Cam-Chr11:9273109 Cam07g0799 Cam-Chr7:20042763 3.20E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52890 PF03106 WRKY 2.40E-25 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0745 - - - 0.0