Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0805 ATGGGGAGTTTTAGAAGTTCATTTTCAAAAAGGTTTGGCCATGGAAATCAACTTCGAGACTGCAGCGGATTCATGGCGGACCGCCGGAGATGGCTAAGTCACCGGAAAATAATTGGAAGGGGATGGGAGTTTGAAGTTGTGTGCACAATTCTTTTGGCTTTGATTCTTCATTTTACTCTTATGATTGGTCAACAGAGTATGGGCTCTTCATCAACTCAACTCTGTGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGCAAATGCATTCGGTAGTCGACTAGATACGAGCATATCACCTATTATAAAAGTGGATGACTGTGTAGACATTAAACCCGAGTTTGTTCCTTTTGAATCAATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGATGATAAGGTACAAAGACGTTTAGCACAAAATCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGCGACTGTTGGAGCAGGAGCTAGAAAGAACTAAGCAACAGAAGGGTACCAGCTGCTTAGTAGATACCAGCCACTTCGGATTCAGCGGATTTGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCACCGAACTCAGAAAGGCGTTGCAAGTTCATACAACTGATATAGAACTCCAAATTTTAGTGGAGAGCAGCCTAAACCATTACCACAATCTGTTTTGCATGAAAGCCAATGCTGCGAAGGCTGATGTTTTCTATTTAATGTCTGGTATTTGGAGAACATCGGCAGAGCGTTTTTTCCACTGGATAGGAGGATTTCGCCCATCAGAGCTGCTAAACGTTCTGAAGCCATACTTTGAGCCATTAAATGAACAACAAAGAGCCGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCTGAAGATGCACTCACACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCTAGTGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATGGAGAAACTAGAAGCACTGGAGAGCTTCGTAAGCCAGCCGAGTGTGTGTTACTCTTTTCTTGAACAGGCAGACCATCTCAGGCAACAAACATTGAAGAGAATGTCTCACATCCTAACCACCAAACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGCATCCTCAGTTCGCTCTGGGCTACTCGACCTCGTGAACCTGCCTAG 1299 44.96 MGSFRSSFSKRFGHGNQLRDCSGFMADRRRWLSHRKIIGRGWEFEVVCTILLALILHFTLMIGQQSMGSSSTQLCASRMGIYEPFHQINSWANAFGSRLDTSISPIIKVDDCVDIKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLRLLEQELERTKQQKGTSCLVDTSHFGFSGFVNPGIAAFEMEYNHWVEEQQRQITELRKALQVHTTDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGIWRTSAERFFHWIGGFRPSELLNVLKPYFEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIASDPIGSYISQMGDGMEKLEALESFVSQPSVCYSFLEQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRILSSLWATRPREPA 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10206026 10210297 + CaPI482276_11g008050.1 Cam11g0805 139727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0805 432 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 139 183 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0805 432 FunFam BZIP family transcription factor 140 190 - -
Cam11g0805 432 Coils Coil 167 187 - -
Cam11g0805 432 SMART brlzneu 137 190 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0805 432 SUPERFAMILY Leucine zipper domain 141 182 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0805 432 Gene3D - 140 192 - -
Cam11g0805 432 Coils Coil 308 328 - -
Cam11g0805 432 PANTHER TRANSCRIPTION FACTOR TGA9 69 431 - -
Cam11g0805 432 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 144 159 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0805 432 ProSiteProfiles DOG1 domain profile. 209 427 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cam11g0805 432 Pfam Seed dormancy control 226 301 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cam11g0805 432 Coils Coil 220 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0963 Cam-Chr7:23523074 Cam11g0805 Cam-Chr11:10206026 2.80E-94 dispersed
Cam10g1699 Cam-Chr10:30999001 Cam11g0805 Cam-Chr11:10206026 3.00E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52893 PF14144 DOG1 2.30E-28 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0805 K14431 - csv:101217648 686.026