Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0836 ATGGATTCAGTGGAGGCTATCGAGGAGTTGGCTCAGTTGTCGGACTCCATGCGGCAAGCTGCCGCTTTGCTTGCCGACGAGGACATTGATGAAACCTCCACCTCCGGAGCTTCCTCTCGCAGGCCTTCCACTTTCCTCAACGTCGTTGCCTTGGGGAATGTGGGAGCTGGTAAATCTGCAGTTTTAAATAGCTTGATTGGACATCCTGTTTTGCCAACTGGGGAAAATGGTGCTACTAGGGCTCCCATAAGCATTGACTTACAAAGGGATGGCTCATTGAGCAGCAAATCAATTATCTTGCAAATTGACAATAAGTCTCAGCAAGTTTCTGCAAGTGCTTTGCGACATTCTCTGCAGGACAGATTGAGTAAAGGTTCATCTGGCAAGAGCCGAGATGAAATCTATTTGAAGCTTCGCACTAGTACAGCGCCTCCGTTGAAATTGATTGATTTACCTGGGCTTGATCAGCGGAGCGTGAGTGAATCAATGATTAGTGAATATGCTGAGCACAATGATGCCATTTTACTAGTCATTGTGCCTGCCTCTCAAGCAGCTGAGATTGCTTCAAGTCGTGCCCTCAGACTGGTAAAGGATTATGACGGTGAAGGAACTAGAACTATTGGGATAATTAGCAAAATAGATCAAGCTGCTTCAGATCAGAAATCTCTGGCTGCTGTTCAGGCTTTATTATTAAATCAAGGACCATCGAGAGCTTCAGATATACCTTGGGTTGCTTTAATTGGTCAATCTGTTTCAATTGCTACTGCAGCGTCTGGTTCTGTTGGCTCTGAAAATTCTTTGGAAACTGCTTGGAGGGCCGAGAGCGAAAGTCTGAAATCCATACTGACTGGTGCCCCTCAGAGTAAACTGGGTAGAATTGCTTTGGTGGATGCTTTAGCTCATCAAATACGGAACCGTATGAAAGTCAGACTTCCAAACCTCTTATCAGGGTTACAAGGAAAGTCTCAGATTGTTCAAGATGAATTATCGAAACTTGGTGACCAAATGGGGGAAAGTGCTGAAGGGACAAGAGCTGTAGCCTTGCAACTCTGCCGTGAATTTGAAGATAAGTTTCTTCAGCACATTGCAACCGGTGAGGGCGCTGGTTGGAAAATTGTTGCTAGTTTTGAGGGAAACTTTCCAAACAGAATCAAGCAGCTCCCTCTAGACAGACATTTTGACATTAACAATGTGAAGAGGATTGTGTTAGAAGCCGATGGTTATCAACCATATTTGATATCCCCTGAAAAGGGTTTGCGATCTCTAATTAAAGGTGTTTTAGAGCTTGCAAAAGAACCATCTCGTCTATGTGTCGATGAGGTCCATCGCGTTCTAGTGGATATAGTTTCTGCCGCTGCAAATTCTACACCAGGTCTTGGAAGATACCCGCCTTTCAAGAGAGAGATCGTGGCTATCGCAAGTGCTGCATTAGATGGATTTAAGAATGAAGCGAAGAAAATGGTAGTTGCACTTGTTGACATGGAGCGAGCTTTTGTGCCTCCTCAACATTTTATTCGATTGGTACAAAGGAGGATGGAGAGGCAGCGTCGAGAGGAGGAGGTGAAACATAAATCATCAAAGAAAGGTCAAGAGGCAGAGCAATCAATATTAAACAGGGCAACTAGTCCTCAAACCAGTGGTCAACAAAGTAGTGGAAGCCTGAAATCAATGAAGGATAAACCAGGCAAAGAGGACAAAGAAGTACAGGAAACTTCTGGTTTAAAGACTGCAGGTCCAGAAGGGGAAATAACAGCAGGTTTTCTGTTAAAGAAAAGCGCCAAAACAAGTGGATGGAGTAAAAGATGGTTTGTTCTAAATGAGAAGACCGGAAAGCTTGGTTACACTAAGAAGCAAGAGGAGAGACATTTTCGTGGTGTGATCACTTTGGAGGAATGTAATGTTGAGGAGGCTTCAGATGAAGAAGAAGCTCCTTCCAAGGGTTCAAAGGATAAGAAAGCTAATGGACCAGATTCTGGAAAAGGTCTCGTGTTCAAGATCACGAGCAAGGTTGCATATAAAACCGTTCTTAAAGCACACAACGCTGTTGTCTTGAAGGCTGAAAGTATGGCTGACAAGGTCGAATGGATGAATAAGATACGAAATGTTATTCAACCTTCCAGAGGGCAGATGAAGGGTCCAGAAAGTGGTCTTCCTATGCGGCAGAGTTTTTCAGATGGCTCTCTTGATACAATGAATAGAAAACCTGTCGATCCTGAAGAGGAACTACGATGGATGTCCCAAGAAGTTCGCGGCTATGTTGAAGCTGTCTTGAACAGTTTAGCTGCCAATGTTCCAAAAGCAGTTGTACTTTGCCAAGTTGAGAAAGCCAAGGAAGATATGCTAAATCAGTTGTATAGTTCCATCAGTGCTCAAAGCACACCAAGGATAGAGGAGCTACTTCTCGAGGATCACAATGTAAAGAATAAGAGAGAGCGCTGCCAAAAACAATCATCTCTTCTTTCTAAATTACTGCGTCAACTCAGTGTACATGACAACCGAGCGGCTGCTGCAGCCAACTGGTCGGACAGTGGGGCAGAAAGCAGTCCGAAAATGAGTGCTCCAGCAGGTGAAGACTGGAAATCTGCATTTGACGCTGCAGCCAATGGTCCTGCGAACTACAATAGATCTTCATCCAATGGTCATAGTCGACGCTATAGTGATCCAGATCAAAATGGGGATTTGAACTCACGTTCAAGCTCCAACAGTCGCCGCACTCCGAACCGGATGCCTCCACCCCCACCACCATCTTCGGGTTCAAAATACTATTAG 2769 44.67 MDSVEAIEELAQLSDSMRQAAALLADEDIDETSTSGASSRRPSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDGSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKSRDEIYLKLRTSTAPPLKLIDLPGLDQRSVSESMISEYAEHNDAILLVIVPASQAAEIASSRALRLVKDYDGEGTRTIGIISKIDQAASDQKSLAAVQALLLNQGPSRASDIPWVALIGQSVSIATAASGSVGSENSLETAWRAESESLKSILTGAPQSKLGRIALVDALAHQIRNRMKVRLPNLLSGLQGKSQIVQDELSKLGDQMGESAEGTRAVALQLCREFEDKFLQHIATGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDIVSAAANSTPGLGRYPPFKREIVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKHKSSKKGQEAEQSILNRATSPQTSGQQSSGSLKSMKDKPGKEDKEVQETSGLKTAGPEGEITAGFLLKKSAKTSGWSKRWFVLNEKTGKLGYTKKQEERHFRGVITLEECNVEEASDEEEAPSKGSKDKKANGPDSGKGLVFKITSKVAYKTVLKAHNAVVLKAESMADKVEWMNKIRNVIQPSRGQMKGPESGLPMRQSFSDGSLDTMNRKPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTPRIEELLLEDHNVKNKRERCQKQSSLLSKLLRQLSVHDNRAAAAANWSDSGAESSPKMSAPAGEDWKSAFDAAANGPANYNRSSSNGHSRRYSDPDQNGDLNSRSSSNSRRTPNRMPPPPPPSSGSKYY 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10848559 10860790 + CaPI482276_11g008360.1 Cam11g0836 139758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0836 922 MobiDBLite consensus disorder prediction 870 905 - -
Cam11g0836 922 Gene3D - 44 327 IPR027417 -
Cam11g0836 922 MobiDBLite consensus disorder prediction 838 922 - -
Cam11g0836 922 MobiDBLite consensus disorder prediction 516 580 - -
Cam11g0836 922 ProSiteProfiles PH domain profile. 581 704 IPR001849 -
Cam11g0836 922 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 42 312 IPR030381 GO:0005525(InterPro)
Cam11g0836 922 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 71 80 IPR019762 -
Cam11g0836 922 Pfam Dynamin GTPase effector domain 740 825 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam11g0836 922 Pfam PH domain 585 703 IPR001849 -
Cam11g0836 922 SUPERFAMILY PH domain-like 582 704 - -
Cam11g0836 922 MobiDBLite consensus disorder prediction 906 922 - -
Cam11g0836 922 Gene3D - 570 708 IPR011993 -
Cam11g0836 922 MobiDBLite consensus disorder prediction 557 571 - -
Cam11g0836 922 PANTHER DYNAMIN 31 827 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Cam11g0836 922 SMART GED_2 737 830 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam11g0836 922 FunFam Dynamin-2A 338 545 - -
Cam11g0836 922 MobiDBLite consensus disorder prediction 635 659 - -
Cam11g0836 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 321 IPR027417 -
Cam11g0836 922 CDD DLP_1 48 312 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam11g0836 922 MobiDBLite consensus disorder prediction 639 656 - -
Cam11g0836 922 FunFam Dynamin-2A 700 810 - -
Cam11g0836 922 SMART PH_update 582 706 IPR001849 -
Cam11g0836 922 FunFam Dynamin-2B isoform A 44 327 - -
Cam11g0836 922 Pfam Dynamin central region 265 503 IPR000375 -
Cam11g0836 922 Pfam Dynamin family 48 212 IPR045063 -
Cam11g0836 922 SMART dynamin_3 7 254 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam11g0836 922 MobiDBLite consensus disorder prediction 516 530 - -
Cam11g0836 922 ProSiteProfiles GED domain profile. 742 835 IPR020850 -
Cam11g0836 922 MobiDBLite consensus disorder prediction 531 556 - -
Cam11g0836 922 FunFam Dynamin-2A 574 708 - -
Cam11g0836 922 Gene3D Dynamin, middle domain 338 545 - -
Cam11g0836 922 PRINTS Dynamin signature 70 87 IPR022812 -
Cam11g0836 922 PRINTS Dynamin signature 182 200 IPR022812 -
Cam11g0836 922 PRINTS Dynamin signature 45 63 IPR022812 -
Cam11g0836 922 PRINTS Dynamin signature 201 217 IPR022812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0836 K01528 - - csv:101220030 1618.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0148 Cam-Chr8:2827208 Cam11g0836 Cam-Chr11:10848559 0.00E+00 dispersed
Cam11g0836 Cam-Chr11:10848559 Cam05g0325 Cam-Chr5:3060633 2.40E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69