Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0915 ATGAAAGAGAGATTGAAAAACTATGCTTCTCAAAGGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACAAACCAATCGATGCTCTTCCGCTCTTTGACTTCTCCATCCACCGCCAACTTTGACTACCATAGTTTGTCCTTGGCCTTTTGTCGGCACCTTCGGCGCCTCTTCAAGGTGGTCCCTTCATCGTTACCCTCTCTCTCTCCCACCTTATGTGATCGTCAACTACCCTCTTACTTTCGTCTCTGTCTTCTCCAAACACCGCCAGCTCTGAGCTCTGTCCTCTGTCAACCATCCTCGGCCTTCTGCTCACCCTCGGCCGCCACTTCATACGTACTGCTTTCTCCTAAATTTTCTGGCCCTTCATCGTCTTCTTCACCAATCATTGACTGTGATGCAGAAACAATGGTCAGTCTTATTGGTTGTGTTCTCGTTTCCTTTGCTAGTTGTCCTTCATTGTTTTATCTTTCTAGGCAAAAGGCACTTGCGGATCTCCATCAAATGCAAACCGTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCACTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTAAGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATCCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA 1332 45.05 MKERLKNYASQRILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSMLFRSLTSPSTANFDYHSLSLAFCRHLRRLFKVVPSSLPSLSPTLCDRQLPSYFRLCLLQTPPALSSVLCQPSSAFCSPSAATSYVLLSPKFSGPSSSSSPIIDCDAETMVSLIGCVLVSFASCPSLFYLSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVSSKSTSGCRSKGGKGKMSASRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13101398 13110893 - CaPI482276_11g009150.1 Cam11g0915 139837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0915 443 ProSiteProfiles Zinc finger RanBP2 type profile. 416 443 IPR001876 -
Cam11g0915 443 CDD Rcat_RBR_ARI7-like 16 70 - -
Cam11g0915 443 MobiDBLite consensus disorder prediction 377 396 - -
Cam11g0915 443 SMART zf_4 418 442 IPR001876 -
Cam11g0915 443 SUPERFAMILY RING/U-box 13 60 - -
Cam11g0915 443 ProSitePatterns Zinc finger RanBP2-type signature. 420 439 IPR001876 -
Cam11g0915 443 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 108 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cam11g0915 443 ProSiteProfiles TRIAD supradomain profile. 1 71 IPR044066 -
Cam11g0915 443 SUPERFAMILY Ran binding protein zinc finger-like 416 443 IPR036443 -
Cam11g0915 443 MobiDBLite consensus disorder prediction 377 414 - -
Cam11g0915 443 Gene3D - 2 123 - -
Cam11g0915 443 Gene3D - 237 375 - -
Cam11g0915 443 Gene3D - 409 443 - -
Cam11g0915 443 Pfam IBR domain 15 55 - -
Cam11g0915 443 SMART ibrneu5 3 67 IPR002867 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0887 Cam-Chr8:13182191 Cam11g0915 Cam-Chr11:13101398 1.70E-125 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0915 K11968 - csv:101218052 401.364