Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0920 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGGCTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGGTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAATTATATAATCTTGGCCGAGGCAGATATACAGCAGCGGCAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCGATTTCAAAAGTAGCTGCTAGCATCTTGCTTCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGACGAAGAAAAGGTCCGTAGATCTGTTGGCTTACTAGAAAAACCAGTTTTGCGACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGTTTCTTAG 525 46.29 MESEDELDMHDAHDDDGSVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLEKPVLRHSNELELPCGICFEIYSRDKIQSAACGHPFCNACWTVS 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13150063 13157909 - CaPI482276_11g009200.1 Cam11g0920 139842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0920 174 MobiDBLite consensus disorder prediction 1 58 - -
Cam11g0920 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 173 IPR013083 -
Cam11g0920 174 MobiDBLite consensus disorder prediction 1 55 - -
Cam11g0920 174 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 78 117 IPR048962 -
Cam11g0920 174 SUPERFAMILY RING/U-box 144 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0920 K11968 - - csv:101218052 290.812
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g1840 . 164 589 ARIADNE family AT4G34370 72.4 7.8e-184 640.2
Cam09g1840 . 58 542 ARIADNE family AT2G16090 77.4 3.6e-225 777.7
Cam09g1840 . 38 543 ARIADNE family AT3G27710 62.0 4.4e-184 641.3
Cam09g1840 . 44 522 ARIADNE family AT3G27720 54.5 5.3e-144 508.1
Cam08g0887 . 61 529 ARIADNE family AT1G05890 74.2 1.1e-217 753.1
Cam08g0887 . 57 589 ARIADNE family AT1G65430 72.0 2.1e-240 828.6
Cam11g0915 . 5 443 ARIADNE family AT1G65430 53.0 4.0e-119 425.6
Cam11g0920 . 37 171 ARIADNE family AT1G65430 65.2 1.0e-45 181.8
Cam08g0887 . 58 454 ARIADNE family AT2G31780 58.4 4.8e-144 508.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72