Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0921 ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTCTCCCCTCAACACCAACCCTCCGACCACCCTCCCGCCGCCGCCCCCTTCACCTCCGACCAAATCTCCCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCATATGGTGTTTATGAACCCTTCAACCGCAATAATCACTCTCAAGATTGGAATAGTATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCAAAGCTTGAAAATTTCCTCGGTCACCACTCTTTCACCGACCACGACCACGCCGCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGGCTGGCGGCGGCGGCGGCGGTGGAAGACCCAACGCCGGTAACGGAAACACCAACAACACTAGCTCTATTGGGTTATCTATGATTAAGACATGGCTAAGAAATCAACCGGCGCCGCCGCAAGCGGTGACCAAGAGTGGCGGAGATCACGACGGTGTAGTTGGAATAGGTAATAATATTACAAGCCCACATACTTTATCACTGTCGATGAACACTGGTCCCCCACCGCAGTCGCAGTCCTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAACGGCGGCGAAAGCTCTTCCTCCGATAACAAACAAGGCAAATCTTCCGCTGCCGAGCTGGACGCTGAAAACGGCGCCGTTGAAGCTGCCCCTCGAAAATCTGTCGATACATTCGGACAAAGAACTTCCATCTACCGCGGAGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTCTGGGACAATAGTTGCAGAAGAGAAGGACAGACTAGAAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCTGCTAGAGCTTACGATTTAGCGGCACTGAAATACTGGGGTACCACAACCACAACAAACTTTCCAATTAGTGATTACGAAAAAGAGTTAGAAGACATGAAGCACATGACTCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCAATTTACCGCGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGACCTCTACTTGGGAACTTTCAGTACACAAGAGGAAGCAGCTGAAGCATATGATATAGCCGCTATAAAGTTTAGGGGACTAAACGCAGTGACAAACTTTGACATGAGCCGTTACGATGTAAAAGCCATTCTTGAAAGCAACACATTACCTATCGGCGGCGCAGCCAAGCGCTTAAAAGACATCGACCACTCCGACATCCCTCTCGACCCCCAACGAACAGACGACACCATAACGTCACACCTCTCTGATGGAATAATAACCACCACCACTGCTCCCTACAGCGGTGGTGGATGGCCCACTCTCGCCTTCCACCACCATCCCTACGCCTTCCACTACCCGTATGCTACCCCACAACAACGGTTGTGGTGCAAGCAAGAACATGACACTACTGCCATCGCCGCCGACAACTTCTTCCCACATGGTGGGGCTATGGACTCGATGGACCACAGCTCGGGGTCGAGCTCCGTGGTTTACAGCAGTGGTAACGGAGATGGGTACAGCGGGAACTTCTTGATCCCAATGGGAGCGGGAGGGGCGGAAGGGAGCAGCAGCAACAACAACAATAGCGGATTGGGAGACATGGGAGAAGTGAATTTATTTGGTAGTTGTTCTAACGTGGATGATCCATACAATGCAACAAGAACGACCAATTTGTATAATTATCATAACCCCTCTCATCAGCTGCAACCACCGCCGCTGTCGTCGGGGTTGCAAGGTTCTAGCTGCAACAACTGGCTTCCTCCGGCAAGGTCGGTTTGTCACGGGGGAGCTCCGCCGCCTTTCACCATTTGGAATGACACTTAG 1962 51.17 MGSINWLGFSLSPQHQPSDHPPAAAPFTSDQISPSDVSAVCFDNLPSSYGVYEPFNRNNHSQDWNSMKGLGSTQSSDFSALIETQHQPKLENFLGHHSFTDHDHAAAAVYTNASANYMFQNCSLELPSEAGGGGGGGRPNAGNGNTNNTSSIGLSMIKTWLRNQPAPPQAVTKSGGDHDGVVGIGNNITSPHTLSLSMNTGPPPQSQSSGSAALPLLTANGGESSSSDNKQGKSSAAELDAENGAVEAAPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDTITSHLSDGIITTTTAPYSGGGWPTLAFHHHPYAFHYPYATPQQRLWCKQEHDTTAIAADNFFPHGGAMDSMDHSSGSSSVVYSSGNGDGYSGNFLIPMGAGGAEGSSSNNNNSGLGDMGEVNLFGSCSNVDDPYNATRTTNLYNYHNPSHQLQPPPLSSGLQGSSCNNWLPPARSVCHGGAPPPFTIWNDT 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13512729 13516902 - CaPI482276_11g009210.1 Cam11g0921 139843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0921 653 FunFam AP2-like ethylene-responsive transcription factor ANT 262 328 - -
Cam11g0921 653 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0921 653 PRINTS Ethylene responsive element binding protein signature 402 422 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0921 653 SUPERFAMILY DNA-binding domain 361 422 IPR016177 GO:0003677(InterPro)
Cam11g0921 653 MobiDBLite consensus disorder prediction 165 253 - -
Cam11g0921 653 FunFam AP2-like ethylene-responsive transcription factor 361 422 - -
Cam11g0921 653 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 205 455 - -
Cam11g0921 653 CDD AP2 262 328 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0921 653 MobiDBLite consensus disorder prediction 10 29 - -
Cam11g0921 653 Gene3D AP2/ERF domain 362 422 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0921 653 Gene3D AP2/ERF domain 263 328 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0921 653 Pfam AP2 domain 363 412 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0921 653 SUPERFAMILY DNA-binding domain 262 328 IPR016177 GO:0003677(InterPro)
Cam11g0921 653 CDD AP2 361 422 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0921 653 ProSiteProfiles AP2/ERF domain profile. 263 326 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0921 653 MobiDBLite consensus disorder prediction 130 151 - -
Cam11g0921 653 SMART rav1_2 263 332 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0921 653 SMART rav1_2 362 426 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0921 653 ProSiteProfiles AP2/ERF domain profile. 362 420 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0921 653 MobiDBLite consensus disorder prediction 186 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2411 Cam-Chr2:36584015 Cam11g0921 Cam-Chr11:13512729 3.50E-105 dispersed
Cam06g1485 Cam-Chr6:26263428 Cam11g0921 Cam-Chr11:13512729 7.40E-98 dispersed
Cam07g1158 Cam-Chr7:25946112 Cam11g0921 Cam-Chr11:13512729 1.20E-93 dispersed
Cam10g0726 Cam-Chr10:12128239 Cam11g0921 Cam-Chr11:13512729 2.10E-100 dispersed
Cam10g1553 Cam-Chr10:29198638 Cam11g0921 Cam-Chr11:13512729 1.00E-42 dispersed
Cam10g2027 Cam-Chr10:34123261 Cam11g0921 Cam-Chr11:13512729 2.40E-39 dispersed
Cam11g0921 Cam-Chr11:13512729 Cam08g1335 Cam-Chr8:19639220 2.20E-52 dispersed
Cam11g0921 Cam-Chr11:13512729 Cam08g2145 Cam-Chr8:26838530 1.30E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52896 PF00847 AP2 3.40E-09 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0921 K09285 - csv:101219473 1049.65