Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0985 | ATGCAGAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGGCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCAGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGCATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCAGAACAAAACAGAGAGCATGAAGATATCCGAAGCTCTAGAAATGCAAATGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTCTCTCAATTGGCTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGGAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCATAAAAGTGATGAGGAACACGAGGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA | 891 | 40.4 | MQNHQQMNLVLSTDAKPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQQSETNAQLKLEEMQRKGGHFDGEENKDRSQNQNKTESMKISEALEMQMEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHKSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 16711235 | 16712588 | + | CaPI482276_11g009850.1 | Cam11g0985 | 139907 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0985 | 296 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 16 | 71 | IPR006447 | GO:0003677(InterPro) | |
Cam11g0985 | 296 | SUPERFAMILY | Homeodomain-like | 15 | 71 | IPR009057 | - | |
Cam11g0985 | 296 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 13 | 73 | IPR017930 | - | |
Cam11g0985 | 296 | MobiDBLite | consensus disorder prediction | 90 | 107 | - | - | |
Cam11g0985 | 296 | FunFam | Myb family transcription factor | 15 | 73 | - | - | |
Cam11g0985 | 296 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 3 | 277 | IPR046955 | GO:0003700(InterPro) | |
Cam11g0985 | 296 | MobiDBLite | consensus disorder prediction | 218 | 284 | - | - | |
Cam11g0985 | 296 | MobiDBLite | consensus disorder prediction | 229 | 277 | - | - | |
Cam11g0985 | 296 | Pfam | Myb-like DNA-binding domain | 18 | 69 | IPR001005 | - | |
Cam11g0985 | 296 | Gene3D | - | 15 | 73 | - | - | |
Cam11g0985 | 296 | MobiDBLite | consensus disorder prediction | 90 | 109 | - | - | |
Cam11g0985 | 296 | Pfam | MYB-CC type transfactor, LHEQLE motif | 112 | 159 | IPR025756 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam09g2321 | Cam-Chr9:37620261 | Cam11g0985 | Cam-Chr11:16711235 | 3.10E-30 | dispersed | |
Cam10g1350 | Cam-Chr10:27048381 | Cam11g0985 | Cam-Chr11:16711235 | 8.10E-39 | dispersed | |
Cam10g1414 | Cam-Chr10:27795707 | Cam11g0985 | Cam-Chr11:16711235 | 6.00E-15 | dispersed | |
Cam10g1658 | Cam-Chr10:30381440 | Cam11g0985 | Cam-Chr11:16711235 | 1.80E-08 | dispersed | |
Cam11g0282 | Cam-Chr11:4281503 | Cam11g0985 | Cam-Chr11:16711235 | 3.10E-09 | dispersed | |
Cam11g0985 | Cam-Chr11:16711235 | Cam11g1679 | Cam-Chr11:29477182 | 5.90E-13 | dispersed | |
Cam11g0985 | Cam-Chr11:16711235 | Cam02g1942 | Cam-Chr2:32518806 | 1.70E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52898 | PF00249 | Myb_DNA-binding | 1.10E-06 | CL0123 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0985 | - | - | - | 0.0 |