Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0985 ATGCAGAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGGCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCAGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGCATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCAGAACAAAACAGAGAGCATGAAGATATCCGAAGCTCTAGAAATGCAAATGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTCTCTCAATTGGCTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGGAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCATAAAAGTGATGAGGAACACGAGGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA 891 40.4 MQNHQQMNLVLSTDAKPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQQSETNAQLKLEEMQRKGGHFDGEENKDRSQNQNKTESMKISEALEMQMEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHKSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16711235 16712588 + CaPI482276_11g009850.1 Cam11g0985 139907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0985 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
Cam11g0985 296 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Cam11g0985 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Cam11g0985 296 MobiDBLite consensus disorder prediction 90 107 - -
Cam11g0985 296 FunFam Myb family transcription factor 15 73 - -
Cam11g0985 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 277 IPR046955 GO:0003700(InterPro)
Cam11g0985 296 MobiDBLite consensus disorder prediction 218 284 - -
Cam11g0985 296 MobiDBLite consensus disorder prediction 229 277 - -
Cam11g0985 296 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Cam11g0985 296 Gene3D - 15 73 - -
Cam11g0985 296 MobiDBLite consensus disorder prediction 90 109 - -
Cam11g0985 296 Pfam MYB-CC type transfactor, LHEQLE motif 112 159 IPR025756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0985 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g2321 Cam-Chr9:37620261 Cam11g0985 Cam-Chr11:16711235 3.10E-30 dispersed
Cam10g1350 Cam-Chr10:27048381 Cam11g0985 Cam-Chr11:16711235 8.10E-39 dispersed
Cam10g1414 Cam-Chr10:27795707 Cam11g0985 Cam-Chr11:16711235 6.00E-15 dispersed
Cam10g1658 Cam-Chr10:30381440 Cam11g0985 Cam-Chr11:16711235 1.80E-08 dispersed
Cam11g0282 Cam-Chr11:4281503 Cam11g0985 Cam-Chr11:16711235 3.10E-09 dispersed
Cam11g0985 Cam-Chr11:16711235 Cam11g1679 Cam-Chr11:29477182 5.90E-13 dispersed
Cam11g0985 Cam-Chr11:16711235 Cam02g1942 Cam-Chr2:32518806 1.70E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0378 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 9.6e-80 293.9
Cam09g2321 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.1e-42 168.3
Cam02g1942 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cam07g0221 . 4 151 G2-like Transcription Factor Family AT3G24120 54.9 2.2e-39 159.8
Cam01g2160 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cam05g1220 . 252 452 G2-like Transcription Factor Family AT5G16560 56.5 7.9e-45 178.3
Cam09g1148 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 1.2e-40 164.5
Cam05g2142 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 6.6e-41 164.5
Cam08g2020 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cam05g2500 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 2.4e-53 206.1
Cam08g0944 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.0e-52 201.4
Cam03g0128 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 2.4e-60 229.6
Cam04g0579 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.1e-74 275.0
Cam10g1619 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.8e-69 257.7
Cam05g0378 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 2.3e-65 246.1
Cam05g0378 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 9.6e-80 293.9
Cam09g2321 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.1e-42 168.3
Cam02g1942 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cam07g0221 . 4 151 G2-like Transcription Factor Family AT3G24120 54.9 2.2e-39 159.8
Cam01g2160 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cam11g0985 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 8.9e-50 194.5
Cam09g2321 . 1 391 G2-like Transcription Factor Family AT1G79430 53.4 1.0e-83 307.4
Cam02g1942 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Cam05g0378 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cam01g2159 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.0e-56 216.1
Cam04g0579 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cam10g1619 . 1 283 G2-like Transcription Factor Family AT3G10760 58.1 8.0e-83 304.3
Cam04g0579 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52898 PF00249 Myb_DNA-binding 1.10E-06 CL0123 Cam TF