Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0985 ATGCAGAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGGCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCAGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGCATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCAGAACAAAACAGAGAGCATGAAGATATCCGAAGCTCTAGAAATGCAAATGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTCTCTCAATTGGCTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGGAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCATAAAAGTGATGAGGAACACGAGGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA 891 40.4 MQNHQQMNLVLSTDAKPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQQSETNAQLKLEEMQRKGGHFDGEENKDRSQNQNKTESMKISEALEMQMEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHKSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16711235 16712588 + CaPI482276_11g009850.1 Cam11g0985 139907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0985 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
Cam11g0985 296 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Cam11g0985 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Cam11g0985 296 MobiDBLite consensus disorder prediction 90 107 - -
Cam11g0985 296 FunFam Myb family transcription factor 15 73 - -
Cam11g0985 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 277 IPR046955 GO:0003700(InterPro)
Cam11g0985 296 MobiDBLite consensus disorder prediction 218 284 - -
Cam11g0985 296 MobiDBLite consensus disorder prediction 229 277 - -
Cam11g0985 296 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Cam11g0985 296 Gene3D - 15 73 - -
Cam11g0985 296 MobiDBLite consensus disorder prediction 90 109 - -
Cam11g0985 296 Pfam MYB-CC type transfactor, LHEQLE motif 112 159 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g2321 Cam-Chr9:37620261 Cam11g0985 Cam-Chr11:16711235 3.10E-30 dispersed
Cam10g1350 Cam-Chr10:27048381 Cam11g0985 Cam-Chr11:16711235 8.10E-39 dispersed
Cam10g1414 Cam-Chr10:27795707 Cam11g0985 Cam-Chr11:16711235 6.00E-15 dispersed
Cam10g1658 Cam-Chr10:30381440 Cam11g0985 Cam-Chr11:16711235 1.80E-08 dispersed
Cam11g0282 Cam-Chr11:4281503 Cam11g0985 Cam-Chr11:16711235 3.10E-09 dispersed
Cam11g0985 Cam-Chr11:16711235 Cam11g1679 Cam-Chr11:29477182 5.90E-13 dispersed
Cam11g0985 Cam-Chr11:16711235 Cam02g1942 Cam-Chr2:32518806 1.70E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52898 PF00249 Myb_DNA-binding 1.10E-06 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0985 - - - 0.0