Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam11g0988 | ATGCAAGAAATAGGGCTGGTTTTGGGATCAGGATTGTTTCGAATAGATGAAGAGGGTGTGAGTGTGATGGGATCTGCAGACAAATCTTGCTTAGTGGCGTCGGCCATTGTCGCTCTGATACCAAGAAGAAGTTTGAGATTTGAAAGATTGCGCTTCAAAACTTCTCTTAAGTCGTTGCCGGAGATCTCAACGGAGACTTTTTTTAGAAGAGAAGGAGGAGAGGAAGAGGAAGATGAAGATGGAGAGGGAAGGAAAATGGAGTTTCATTTCCTCTTTTTAGTGCCCTTTCTCTCACTCCTCTCTTCCGCCGCCGCCTGGATTAATGCTCATGCCACCTTCTACGGCGGCAGCGATGCTTCCGGGACAATGGGTGGAGCTTGTGGGTATGGGAATCTTTACAGTGAAGGCTACGGAACCAACACTGCAGCAGTTAGCACTGCTCTTTTCAACAATGGGTTGAACTGTGGGTCTTGTTATGAAATCAAGTGCGTTAATGACCCGAAATGGTGCCTCCATGGCTCTATTTTGGTCACTGCAACCAATTTCTGTCCGCCCAATAATGCACTTCCTAATAACGCCGGCGGCTGGTGCAACCCTCCCCTCCACCACTTTGACCTCTCCCAGTCCGTCTTCCTCCGCATTGCTCAATACCACGCCGGCATCGTCCCAGTCGTCTATCGCAGAGCTCCATGTAAGAGGAAGGGAGGAGTAAGGTTCACAATCAATGGGCATTCCTACTTCAACTTAGTGCTAATAACCAACGTCGGGGGCGCCGGGGATGTGCATGCGGTGTCCGTGAAAGGGTCTAGAACTGGTTGGCAATCAATGTCCAGAAATTGGGGACAGAACTGGCAAAGCCACACCTATTTGGATGGTCAAACCCTCTCTTTCAAGCTCACTACTAGCGACGGCCGTACGCTTATTTCCAACAATGTCGTTCCTGCCGGCTGGTCCTTTGGCCAGACCTTCACCGGCGCCCAATTCCGGTGA | 990 | 50.3 | MQEIGLVLGSGLFRIDEEGVSVMGSADKSCLVASAIVALIPRRSLRFERLRFKTSLKSLPEISTETFFRREGGEEEEDEDGEGRKMEFHFLFLVPFLSLLSSAAAWINAHATFYGGSDASGTMGGACGYGNLYSEGYGTNTAAVSTALFNNGLNCGSCYEIKCVNDPKWCLHGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQSVFLRIAQYHAGIVPVVYRRAPCKRKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTGWQSMSRNWGQNWQSHTYLDGQTLSFKLTTSDGRTLISNNVVPAGWSFGQTFTGAQFR | 329 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 17050594 | 17055462 | + | CaPI482276_11g009880.1 | Cam11g0988 | 139910 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam11g0988 | 329 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 124 | 236 | IPR007112 | - | |
| Cam11g0988 | 329 | Pfam | Lytic transglycolase | 141 | 226 | IPR009009 | - | |
| Cam11g0988 | 329 | SUPERFAMILY | PHL pollen allergen | 233 | 325 | IPR036749 | - | |
| Cam11g0988 | 329 | PANTHER | EXPANSIN-A15 | 92 | 328 | IPR002963 | GO:0009664(InterPro) | |
| Cam11g0988 | 329 | SUPERFAMILY | Barwin-like endoglucanases | 97 | 254 | IPR036908 | - | |
| Cam11g0988 | 329 | FunFam | Expansin | 236 | 328 | - | - | |
| Cam11g0988 | 329 | Pfam | Expansin C-terminal domain | 237 | 314 | IPR007117 | - | |
| Cam11g0988 | 329 | SMART | dpbb_1 | 141 | 226 | IPR007112 | - | |
| Cam11g0988 | 329 | CDD | DPBB_EXPA_N | 106 | 231 | - | - | |
| Cam11g0988 | 329 | FunFam | Expansin | 98 | 232 | - | - | |
| Cam11g0988 | 329 | PRINTS | Expansin signature | 235 | 247 | IPR002963 | GO:0009664(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin signature | 175 | 185 | IPR002963 | GO:0009664(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin signature | 282 | 303 | IPR002963 | GO:0009664(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin signature | 311 | 327 | IPR002963 | GO:0009664(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin signature | 136 | 150 | IPR002963 | GO:0009664(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin signature | 194 | 211 | IPR002963 | GO:0009664(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin signature | 247 | 268 | IPR002963 | GO:0009664(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin signature | 163 | 174 | IPR002963 | GO:0009664(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin signature | 211 | 224 | IPR002963 | GO:0009664(InterPro) | |
| Cam11g0988 | 329 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 246 | 325 | IPR007117 | - | |
| Cam11g0988 | 329 | Gene3D | - | 236 | 328 | IPR036749 | - | |
| Cam11g0988 | 329 | PRINTS | Expansin/Lol pI family signature | 219 | 235 | IPR007118 | GO:0005576(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin/Lol pI family signature | 105 | 120 | IPR007118 | GO:0005576(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin/Lol pI family signature | 273 | 287 | IPR007118 | GO:0005576(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin/Lol pI family signature | 123 | 141 | IPR007118 | GO:0005576(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin/Lol pI family signature | 145 | 163 | IPR007118 | GO:0005576(InterPro) | |
| Cam11g0988 | 329 | PRINTS | Expansin/Lol pI family signature | 311 | 325 | IPR007118 | GO:0005576(InterPro) | |
| Cam11g0988 | 329 | Gene3D | - | 98 | 232 | IPR036908 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam04g1247 | Cam-Chr4:26462635 | Cam11g0988 | Cam-Chr11:17050594 | 4.20E-86 | dispersed | |
| Cam06g1754 | Cam-Chr6:28789906 | Cam11g0988 | Cam-Chr11:17050594 | 6.70E-111 | dispersed | |
| Cam07g0517 | Cam-Chr7:7464474 | Cam11g0988 | Cam-Chr11:17050594 | 2.90E-106 | dispersed | |
| Cam09g1863 | Cam-Chr9:33177856 | Cam11g0988 | Cam-Chr11:17050594 | 5.40E-105 | dispersed | |
| Cam09g2011 | Cam-Chr9:34743180 | Cam11g0988 | Cam-Chr11:17050594 | 1.10E-98 | dispersed | |
| Cam10g0641 | Cam-Chr10:10019613 | Cam11g0988 | Cam-Chr11:17050594 | 2.20E-66 | dispersed | |
| Cam11g0593 | Cam-Chr11:7488743 | Cam11g0988 | Cam-Chr11:17050594 | 1.80E-105 | dispersed | |
| Cam11g0988 | Cam-Chr11:17050594 | Cam05g2614 | Cam-Chr5:33721645 | 3.20E-121 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam11g0988 | - | - | - | 0.0 |