Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0999 ATGGAGCATGGAGATGTTGTGTCGAAGGGCATGGCGTCAGACCCTTCGAGTTCATACCAAAAAATCATAATAGTTGCGGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTGACACCTTACGTACAGCAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGTGGGCCATTATCAGGGCTTATTGTCCAACCCACTGTTGGATATTACAGCGATCGTTGCACTTCTAGGTTTGGTCGTCGTCGACCATTCATTGCTGCTGGGGCTGGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGGCATGCAGCGGGAGATCAACTTGCTGCACGCACAAAACCAAGGGCTGTAGCCATATTTGTTGTCGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCAGGTACCAACCACAAGAAGATGAGAATGGCCAATGGTTTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGTTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCCTTCACAATAACCAAAGCATGTGACACTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTGTTTCTCCTCCTCATTACCACCTTTGCCGTGTTTACCGTCAGCGAGAAGCAATTTGAGCGCTTGGAGATTGACGAAGAAGCAACACCCTTTTTCGGGAAGTTGCTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATCTTGTTACTCGTAACAGCTTTGAACTGGATTGGTTGGTTCCCATTTATAATGTATGACACTGACTGGATGGGTTTGGAAGTGTATGGAGGAAAGCCAAATGGAACTCCAGAACAAGTCAAGTTCTATGACCTTGGTGTTCGTTCTGGGGCCCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGCGATTGAGCCAATTAGCCGTATTCTAGGAGGTCTCAGGTGGTGGTGGGGAATTGTGAACATCATATTCACCATTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGCTGGAGGTCCATTAACGGTTTGCGCCTTCCTCCCGCGAACGTTAGGGCCGGAGCTTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCACTTGCATCCATCTTTTCTTCAGAATCTGATGCGGGTCAAGGCCTCTCTTTGGGAATTCTCAACCTCTTCATTGTCATCCCACAGTTCATTGTGTCTGCAGTTAGTGGACCTTTAGATGCAGCTTTCGGAGGTGGAAACTTACCCGCATTCGTACTGGGTGGAATTGCTTCTTTTGCAAGCGCAATGTGCGCTATGTTCGTCCTTCCAGATCCACCACCTCAATCCGAAGTCTCCTTGACAGTGGGGGCCGGCCATTGA 1488 47.85 MEHGDVVSKGMASDPSSSYQKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIAAGAGFVAAAVFLIGFAADIGHAAGDQLAARTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSGTNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLLITTFAVFTVSEKQFERLEIDEEATPFFGKLLGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPNGTPEQVKFYDLGVRSGALGLMINSFVLGFSALAIEPISRILGGLRWWWGIVNIIFTICMGSTVVVTKVAERWRSINGLRLPPANVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVLGGIASFASAMCAMFVLPDPPPQSEVSLTVGAGH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17843018 17844597 + CaPI482276_11g009990.1 Cam11g0999 139921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0999 495 CDD MFS_SLC45_SUC 31 476 - -
Cam11g0999 495 Gene3D MFS general substrate transporter like domains 16 486 IPR036259 -
Cam11g0999 495 Pfam MFS/sugar transport protein 28 279 - -
Cam11g0999 495 PANTHER SUGAR TRANSPORTER 12 477 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cam11g0999 495 NCBIfam sucrose/proton symporter 19 482 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Cam11g0999 495 SUPERFAMILY MFS general substrate transporter 22 484 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0999 K15378 - - csv:116401998 904.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1654 Cam-Chr8:22778996 Cam11g0999 Cam-Chr11:17843018 2.10E-127 dispersed
Cam09g2225 Cam-Chr9:36779752 Cam11g0999 Cam-Chr11:17843018 1.60E-113 dispersed
Cam11g0999 Cam-Chr11:17843018 Cam11g1005 Cam-Chr11:18286557 1.90E-287 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam11g0999 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-174 607.8
Cam11g1005 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-174 607.8
Cam08g1654 . 32 484 Sucrose Transporter Gene Family AT1G22710 51.2 8.9e-134 474.2
Cam11g0999 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 7.9e-172 600.5
Cam11g1005 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 7.9e-172 600.5
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT2G14670 51.9 1.0e-131 467.2
Cam11g0999 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 1.9e-143 506.1
Cam11g1005 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 1.9e-143 506.1
Cam08g1654 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.2 2.7e-110 396.0
Cam09g2225 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.1e-182 635.6
Cam11g1005 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 7.4e-162 567.4
Cam11g0999 . 14 479 Sucrose Transporter Gene Family AT5G06170 60.9 2.1e-161 565.8
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT5G06170 50.8 2.2e-126 449.5
Cam11g0999 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 5.6e-170 594.3
Cam11g1005 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 5.6e-170 594.3
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT5G43610 51.3 6.3e-129 458.0
Cam08g1654 . 18 485 Sucrose Transporter Gene Family AT1G09960 70.8 5.1e-198 687.6
Cam11g1005 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.3 9.8e-133 470.7
Cam11g0999 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 2.8e-132 469.2
Cam11g0999 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 7.7e-170 594.0
Cam11g1005 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 7.7e-170 594.0
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT1G71880 52.5 1.7e-129 459.9
Cam11g0999 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Cam11g1005 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Cam11g0999 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 7.7e-170 594.0
Cam11g1005 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 7.7e-170 594.0
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT1G71880 52.5 1.7e-129 459.9
Cam11g0999 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-174 607.8
Cam11g1005 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-174 607.8
Cam08g1654 . 32 484 Sucrose Transporter Gene Family AT1G22710 51.2 8.9e-134 474.2
Cam09g2225 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.1e-182 635.6
Cam08g1654 . 18 485 Sucrose Transporter Gene Family AT1G09960 70.8 5.1e-198 687.6
Cam11g1005 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.3 9.8e-133 470.7
Cam11g0999 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 2.8e-132 469.2
Cam11g0999 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Cam11g1005 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Cam11g0999 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 5.6e-170 594.3
Cam11g1005 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 5.6e-170 594.3
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT5G43610 51.3 6.3e-129 458.0
Cam11g0999 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 1.9e-143 506.1
Cam11g1005 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 1.9e-143 506.1
Cam08g1654 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.2 2.7e-110 396.0
Cam11g0999 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 7.9e-172 600.5
Cam11g1005 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 7.9e-172 600.5
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT2G14670 51.9 1.0e-131 467.2
Cam11g1005 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 7.4e-162 567.4
Cam11g0999 . 14 479 Sucrose Transporter Gene Family AT5G06170 60.9 2.1e-161 565.8
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT5G06170 50.8 2.2e-126 449.5