Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1005 ATGGAGCATGGAGATGTTGTGTCGAAGGGCATGGTGTCAGACCCTTCGAGTTCATACCAAAAAATCATAATAGTTGCGGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTGACACCTTACGTACAGCAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGTGGGCCATTATCAGGGCTTATTGTCCAACCCACTGTTGGATATTACAGCGATCGTTGCACTTCTAGGTTTGGTCGTCGTCGACCATTCATTGCTGCTGGGGCTGGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGGCATGCAGCGGGAGATCAACTTGCTGCACGCACAAAACCAAGGGCTGTAGCCATATTTGTTGTCGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCAGGTACCAACCACAAGAAGATGAGAATGGCCAATGGTTTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGTTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCCTTCACAATAACCAAAGCATGTGACACTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTGTTTCTCCTCCTCATTACCACCTTTGCCGTGTTTACCGTCAGCGAGAAGCAATTTGAGCGCTTGGAGATTGACGAAGAAGCAACACCCTTTTTCGGGAAGTTGCTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATCTTGTTACTCGTAACAGCTTTGAACTGGATTGGTTGGTTCCCATTTATAATGTATGACACTGACTGGATGGGTTTGGAAGTGTATGGAGGAAAGCCAAATGGAACTCCAGAACAAGTCAAGTTCTATGACCTTGGTGTTCGTTCTGGGGCCCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGCGATTGAGCCAATTAGCCGTATTCTAGGAGGTCTCAGGTGGTGGTGGGGAATTGTGAACATCATATTCACCATTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGCTGGAGGTCCATTAACGGTTTGCGCCTTCCTCCCGCGAACGTTAGGGCCGGAGCTTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCACTTGCATCCATCTTTTCTTCAGAATCTGATGCGGGTCAAGGCCTCTCTTTGGGAATTCTCAACCTCTTCATTGTCATCCCACAGTTCATTGTGTCTGCAGTTAGTGGACCTTTAGATGCAGCTTTCGGAGGTGGAAACTTACCCGCATTCGTACTGGGTGGAATTGCTTCTTTTGCAAGCGCAATGTGCGCTATGTTCGTCCTTCCAGATCCACCACCTCAATCCGAAGTCTCCTTGACAGTGGGGGCCGGCCATTGA 1488 47.78 MEHGDVVSKGMVSDPSSSYQKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIAAGAGFVAAAVFLIGFAADIGHAAGDQLAARTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSGTNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLLITTFAVFTVSEKQFERLEIDEEATPFFGKLLGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPNGTPEQVKFYDLGVRSGALGLMINSFVLGFSALAIEPISRILGGLRWWWGIVNIIFTICMGSTVVVTKVAERWRSINGLRLPPANVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVLGGIASFASAMCAMFVLPDPPPQSEVSLTVGAGH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18286557 18288136 + CaPI482276_11g010050.1 Cam11g1005 139927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1005 495 CDD MFS_SLC45_SUC 31 476 - -
Cam11g1005 495 Gene3D MFS general substrate transporter like domains 16 486 IPR036259 -
Cam11g1005 495 Pfam MFS/sugar transport protein 28 279 - -
Cam11g1005 495 NCBIfam sucrose/proton symporter 19 482 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Cam11g1005 495 PANTHER SUGAR TRANSPORTER 14 477 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cam11g1005 495 SUPERFAMILY MFS general substrate transporter 22 484 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1005 K15378 - - csv:116401998 902.894
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g0999 Cam-Chr11:17843018 Cam11g1005 Cam-Chr11:18286557 1.90E-287 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam11g0999 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-174 607.8
Cam11g1005 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-174 607.8
Cam08g1654 . 32 484 Sucrose Transporter Gene Family AT1G22710 51.2 8.9e-134 474.2
Cam11g0999 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 7.9e-172 600.5
Cam11g1005 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 7.9e-172 600.5
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT2G14670 51.9 1.0e-131 467.2
Cam11g0999 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 1.9e-143 506.1
Cam11g1005 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 1.9e-143 506.1
Cam08g1654 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.2 2.7e-110 396.0
Cam09g2225 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.1e-182 635.6
Cam11g1005 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 7.4e-162 567.4
Cam11g0999 . 14 479 Sucrose Transporter Gene Family AT5G06170 60.9 2.1e-161 565.8
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT5G06170 50.8 2.2e-126 449.5
Cam11g0999 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 5.6e-170 594.3
Cam11g1005 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 5.6e-170 594.3
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT5G43610 51.3 6.3e-129 458.0
Cam08g1654 . 18 485 Sucrose Transporter Gene Family AT1G09960 70.8 5.1e-198 687.6
Cam11g1005 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.3 9.8e-133 470.7
Cam11g0999 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 2.8e-132 469.2
Cam11g0999 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 7.7e-170 594.0
Cam11g1005 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 7.7e-170 594.0
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT1G71880 52.5 1.7e-129 459.9
Cam11g0999 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Cam11g1005 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Cam11g0999 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 7.7e-170 594.0
Cam11g1005 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 7.7e-170 594.0
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT1G71880 52.5 1.7e-129 459.9
Cam11g0999 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-174 607.8
Cam11g1005 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-174 607.8
Cam08g1654 . 32 484 Sucrose Transporter Gene Family AT1G22710 51.2 8.9e-134 474.2
Cam09g2225 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.1e-182 635.6
Cam08g1654 . 18 485 Sucrose Transporter Gene Family AT1G09960 70.8 5.1e-198 687.6
Cam11g1005 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.3 9.8e-133 470.7
Cam11g0999 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 2.8e-132 469.2
Cam11g0999 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Cam11g1005 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Cam11g0999 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 5.6e-170 594.3
Cam11g1005 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 5.6e-170 594.3
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT5G43610 51.3 6.3e-129 458.0
Cam11g0999 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 1.9e-143 506.1
Cam11g1005 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 1.9e-143 506.1
Cam08g1654 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.2 2.7e-110 396.0
Cam11g0999 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 7.9e-172 600.5
Cam11g1005 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 7.9e-172 600.5
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT2G14670 51.9 1.0e-131 467.2
Cam11g1005 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 7.4e-162 567.4
Cam11g0999 . 14 479 Sucrose Transporter Gene Family AT5G06170 60.9 2.1e-161 565.8
Cam08g1654 . 31 484 Sucrose Transporter Gene Family AT5G06170 50.8 2.2e-126 449.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60