Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1036 ATGGCCACTGTTTCTTGCCAACCTTCCGATTTGGCACCCCTTCTCGGCTCAGCAGCCACCGCGAATTCAACCGCCATAGCCGAGTTCCTATGCTCAAGATTCACCACCATAGCCACCACTTTCAGCTCCACCACCTACGCCGTCGACAACACATACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTGGGGTTTGCCATGCTTTGTGCTGGCTCGGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCTGCCGGTGGCCTCTCCTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGTGCCCCCTCCAACTCCTTCATCGGCCGCCACTTTTTTGGCCTCTCCAATTTCCCCAACCCCTCTACTGATTATAGCTTCTTTCTCTATCAATGGGCTTTTGCTATTGCTGCTGCAGGCATTACTAGTGGTTCCATTGCTGAGCGAACTCAATTTGTTGCCTATCTCATCTATTCTAGCATTCTTACTGGTTTCGTTTATCCCATAGTCTCCCATTGGTTTTGGTCTGCCGACGGGTGGGCTAGCCCAACCCGACCCAGTAACCTTATGTTCAATTCAGGGGCAATCGACTTTGCCGGATCAGGTGTGGTCCACATGGTCGGTGGCATAGCTGGTCTCTGGGGTGCCTTAATCGAAGGCCCTCGGATCGGCCGGTTTGATCGATCTGGCCGTTCTGTAGCCCTTCGCGGCCATAGTGCCTCCTTAGTAGTTCTTGGCTCTTTCCTCCTTTGGTTTGGGTGGTACGGGTTCAACCCAGGTTCATTTCTAACAATCTCCAAATCATACAATGATGGTCGTCCTTACTACGGACAATGGAGTGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACAACCCTCTTTACAAAACGCTTATTAGTTGGCCATTGGAACGTAATTGATGTATGCAATGGCTTATTAGGTGGATTTGCCGCTATCACGTCCGGTTGCGCTGTTGTTGAGCCATGGGCTGCGGTGATATGTGGATTTGTAGCATCCTGGGTGTTAACTGGCTTCAACAAGCTAGCTGAGAAGGTCAGCTACGATGACCCACTAGAGGCGGCGCAACTGCATGGCGGGTGTGGGGCGTGGGGCTTGATATTCACAGGATTATTTGCAAGAAAGGAGTATGTAGCAGAGGTTTACCAGGCCGGGCGTCCATATGGGTTGTTGATGGGTGGCGGAGGGAGGTTGCTGGCTGCCCAGTTGGTGGAGATAATGGCGATAATTGGGTGGGTTTCTGTAACGATGGGGGGATTGTTTTATGGGCTAAAGAAGGTGAAATTGTTGAGAATATCAAGGGAAGATGAGATGGCTGGGATGGATTTGACAAGACATGGAGGCTTTGCTTATGTATATAATGATGAGGAGGATCCGTCTGCAAAGCCATCTGGATTTATGATGAGGAGAATTGAGCCTGCTAATGAAACTCCTCCTCAACAGAATTCTTCTTCAGGGATGGTAGCTGTTTGA 1536 50.78 MATVSCQPSDLAPLLGSAATANSTAIAEFLCSRFTTIATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSNFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSILTGFVYPIVSHWFWSADGWASPTRPSNLMFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLTGFNKLAEKVSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYQAGRPYGLLMGGGGRLLAAQLVEIMAIIGWVSVTMGGLFYGLKKVKLLRISREDEMAGMDLTRHGGFAYVYNDEEDPSAKPSGFMMRRIEPANETPPQQNSSSGMVAV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19640884 19643211 + CaPI482276_11g010360.1 Cam11g1036 139958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1036 511 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cam11g1036 511 Gene3D Ammonium transporter AmtB like domains 30 487 IPR029020 -
Cam11g1036 511 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cam11g1036 511 FunFam Ammonium transporter 30 487 - -
Cam11g1036 511 SUPERFAMILY Ammonium transporter 46 453 - -
Cam11g1036 511 PANTHER AMMONIUM TRANSPORTER 19 481 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cam11g1036 511 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0144 Cam-Chr7:2589311 Cam11g1036 Cam-Chr11:19640884 9.30E-210 dispersed
Cam11g1036 Cam-Chr11:19640884 Cam11g1038 Cam-Chr11:19764934 1.40E-264 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1036 K03320 - csv:101222356 928.317