Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g1090 | CATACCTTGAAAGATGTGTTGGTACTGGATACTGTTTTTCTTACATATGACATAGTTGCTCTAATTTCAAGTGATATGGGGACAGAGCTTATGAGCGTCTGCGTTGAAGAAGATAGTGATGACTTTCCGTCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTAGGGAAGGTGCACAATCATGAAAAACAAGACAGTTGTGTCCCTGTTAGTTTGCCAACTGTCTCTGAATCACAACCAGTCAAAGTGGGAAGTGAGGTTGAAGGTGGCAATGTTGCAAAAGTTACAAGGTCCCTACGGCGTAAACCATGTGTAAACTATAGACAATATGATTACTGCTCTGATGACGAGATTGATAGTACTAAGTGTCTAGATCAGAATTTTTCTTCAAGGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGAACCTTGAGGATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCAAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGGGGTCTAAATTTGCAACTCGTGTCCAAAGAATTGATAAGCTTCAAAATCGAGATTCAATAAGAAAGAACTCTAGGGTTTGCAGTCAGATGAGAAGGAAAAGGAGGAGGAGTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGCAAAATTGGAGATGCTGGCCCTGTTGAGGCGGAAAGATTCGGATTTGATCCTGGCCCAGATTTTACTTTAGCATTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCAACGATACTACAAAGGGATGTAATGCATCTATGCTGCAAGAGAACAAACATGAACCATCTTTAGAGGCTATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGCTTTCCAAAGATTTGCTGTCAAGAGGGCTCTACATTGGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGTAGCAATATATCTGGAGTCTTGGTACCATGGCTTTATATCGGGATGTGCTTTTCGTCTTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGAAAGTTAGAAGAGGCTATGAGAAAACATTTGCCTAACCTCTTTCAAGAACAACCTGATTTACTCCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAAATGGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAAGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGAAAATTTAAGATGGAATAATGTTTGTGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTGTTGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTCGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGCTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATCAGTGAATTGAACATACTTCTTGAAGCATTGGAGGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTCGGTCTGGCACTCAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCCTTGGGAATCCTCAATGGAAAGAATTCTTGAGGCAATCTTCATTATTACCAACTCTAACCGCTTTTGACAGCCCTTCTCATCATGCCAAAAAGTTATCTGAAGTTACTGCTTCCTTTTCAGAAGTTAAGAAGGTAATTTCCACAGTTGACGGATCTGGGAAGGAAATTGAGCAGCAAAATCATCAAATTGAGGTGAAAAAAGAAAACCATGACCTTGTGGCAACCAATTCAAGACATGAAGATTCACAGTCCTGTAAGGAAGATACAAATGCTCTGAATTTAGTAGAAGTGAAAAATACAACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATCCAGACCGGTTCACTGAGATTGATTCCAAGGCCAGCCTGTGCAACTACGATGAAAATGCCATTTTGCACACTCCCGTGACTGATGCAACGGCCATGGGAGAAAAGGAGGTCAACTTGTTGACTGAAAAAAGATTGAATAGTTGCCAATCGAGCATTGTGCCTTTAAATAGTAAACAGTTTCAAAACATTAACTTATCAGTTAGAGATGCAGCTAATGCTATTCAGAACACCTCAGATGCAGGATTAAGTCATAGTAATAGAGTATTTCCAGCGTCAACAGACACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAATTGAATGAGGGTAAGCATGGAAATGTGGGAGCAAGTGCTACCTCTTGTGTGTTAGACCCAAGTAGAACTACTGCAAATTTATCTTGCAATCAAGCTAATATGGATAGATTCATGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATTAACTGCAATGTTGAGCCTTTAGAATATGGAATCGTGCTCTCAGGAAAGTCTTGGTCAAACTGTCAGGCCATTTTCCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAGTGTTTTAGATCCGTCAACTTTGTGTTACTATGTTTCTGAAATTCTTGATGCTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGCGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTTGAAATGTTCGGATTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACTGAAAGGAACCACGGGGTTGATTCTAGGCCAGCTGGAGTTGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGTGTGTTAGCTCGACTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA | 3777 | 41.94 | HTLKDVLVLDTVFLTYDIVALISSDMGTELMSVCVEEDSDDFPSVPPGFESYISFSLGKVHNHEKQDSCVPVSLPTVSESQPVKVGSEVEGGNVAKVTRSLRRKPCVNYRQYDYCSDDEIDSTKCLDQNFSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFATRVQRIDKLQNRDSIRKNSRVCSQMRRKRRRSNRKGVDVTTLNGKIGDAGPVEAERFGFDPGPDFTLALFQKYADDFKSQYFSKPLNDTTKGCNASMLQENKHEPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKICCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKMEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLENLRWNNVCGKDGILARAFKTRVEMECARRNLPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSLGNPQWKEFLRQSSLLPTLTAFDSPSHHAKKLSEVTASFSEVKKVISTVDGSGKEIEQQNHQIEVKKENHDLVATNSRHEDSQSCKEDTNALNLVEVKNTTDKMCPENVILLSDDEGDEHKKTISNGLAESSSVKQLGNPDRFTEIDSKASLCNYDENAILHTPVTDATAMGEKEVNLLTEKRLNSCQSSIVPLNSKQFQNINLSVRDAANAIQNTSDAGLSHSNRVFPASTDTDSQKPQTCGSGKLNEGKHGNVGASATSCVLDPSRTTANLSCNQANMDRFMRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNCQAIFPKGFKSRVKFISVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGFEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNHGVDSRPAGVDIVLRGLLKKANLEELNSLYTLLNDNRPTVDQGVLARLLNEEIQSHRR | 1258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21067884 | 21079653 | + | CaPI482276_11g010900.1 | Cam11g1090 | 140012 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g1090 | 1258 | SMART | fyrn_3 | 1036 | 1080 | IPR003888 | GO:0005634(InterPro) | |
Cam11g1090 | 1258 | Pfam | JmjC domain, hydroxylase | 416 | 532 | IPR003347 | - | |
Cam11g1090 | 1258 | ProSiteProfiles | JmjN domain profile. | 170 | 211 | IPR003349 | - | |
Cam11g1090 | 1258 | SMART | JmjN_1 | 169 | 210 | IPR003349 | - | |
Cam11g1090 | 1258 | ProSiteProfiles | FYR domain FYRC motif profile. | 1082 | 1172 | IPR003889 | GO:0005634(InterPro) | |
Cam11g1090 | 1258 | SMART | fyrc_3 | 1086 | 1180 | IPR003889 | GO:0005634(InterPro) | |
Cam11g1090 | 1258 | ProSiteProfiles | JmjC domain profile. | 383 | 549 | IPR003347 | - | |
Cam11g1090 | 1258 | Pfam | F/Y-rich N-terminus | 1037 | 1079 | IPR003888 | GO:0005634(InterPro) | |
Cam11g1090 | 1258 | SUPERFAMILY | Clavaminate synthase-like | 384 | 576 | - | - | |
Cam11g1090 | 1258 | ProSiteProfiles | FYR domain FYRN motif profile. | 1022 | 1080 | IPR003888 | GO:0005634(InterPro) | |
Cam11g1090 | 1258 | MobiDBLite | consensus disorder prediction | 1176 | 1202 | - | - | |
Cam11g1090 | 1258 | FunFam | Putative lysine-specific demethylase JMJ16 | 1028 | 1166 | - | - | |
Cam11g1090 | 1258 | Gene3D | Cupin | 155 | 533 | - | - | |
Cam11g1090 | 1258 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 151 | 961 | - | GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER) | |
Cam11g1090 | 1258 | Pfam | jmjN domain | 171 | 204 | IPR003349 | - | |
Cam11g1090 | 1258 | SMART | cupin_9 | 383 | 549 | IPR003347 | - | |
Cam11g1090 | 1258 | MobiDBLite | consensus disorder prediction | 948 | 978 | - | - | |
Cam11g1090 | 1258 | MobiDBLite | consensus disorder prediction | 1175 | 1204 | - | - | |
Cam11g1090 | 1258 | Gene3D | - | 1030 | 1166 | - | - | |
Cam11g1090 | 1258 | MobiDBLite | consensus disorder prediction | 948 | 972 | - | - | |
Cam11g1090 | 1258 | Pfam | C5HC2 zinc finger | 639 | 690 | IPR004198 | - | |
Cam11g1090 | 1258 | Pfam | F/Y rich C-terminus | 1084 | 1168 | IPR003889 | GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0277 | Cam-Chr1:3081043 | Cam11g1090 | Cam-Chr11:21067884 | 1.90E-93 | dispersed | |
Cam01g0906 | Cam-Chr1:10759217 | Cam11g1090 | Cam-Chr11:21067884 | 2.20E-236 | dispersed | |
Cam09g0783 | Cam-Chr9:7953886 | Cam11g1090 | Cam-Chr11:21067884 | 1.40E-175 | dispersed | |
Cam10g0131 | Cam-Chr10:2928932 | Cam11g1090 | Cam-Chr11:21067884 | 1.50E-53 | dispersed | |
Cam11g1090 | Cam-Chr11:21067884 | Cam09g1149 | Cam-Chr9:12146272 | 1.50E-54 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52906 | PF02373 | JmjC | 1.80E-44 | CL0029 | Cam | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g1090 | K11446 | - | csv:101208186 | 2291.54 |