Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1090 CATACCTTGAAAGATGTGTTGGTACTGGATACTGTTTTTCTTACATATGACATAGTTGCTCTAATTTCAAGTGATATGGGGACAGAGCTTATGAGCGTCTGCGTTGAAGAAGATAGTGATGACTTTCCGTCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTAGGGAAGGTGCACAATCATGAAAAACAAGACAGTTGTGTCCCTGTTAGTTTGCCAACTGTCTCTGAATCACAACCAGTCAAAGTGGGAAGTGAGGTTGAAGGTGGCAATGTTGCAAAAGTTACAAGGTCCCTACGGCGTAAACCATGTGTAAACTATAGACAATATGATTACTGCTCTGATGACGAGATTGATAGTACTAAGTGTCTAGATCAGAATTTTTCTTCAAGGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGAACCTTGAGGATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCAAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGGGGTCTAAATTTGCAACTCGTGTCCAAAGAATTGATAAGCTTCAAAATCGAGATTCAATAAGAAAGAACTCTAGGGTTTGCAGTCAGATGAGAAGGAAAAGGAGGAGGAGTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGCAAAATTGGAGATGCTGGCCCTGTTGAGGCGGAAAGATTCGGATTTGATCCTGGCCCAGATTTTACTTTAGCATTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCAACGATACTACAAAGGGATGTAATGCATCTATGCTGCAAGAGAACAAACATGAACCATCTTTAGAGGCTATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGCTTTCCAAAGATTTGCTGTCAAGAGGGCTCTACATTGGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGTAGCAATATATCTGGAGTCTTGGTACCATGGCTTTATATCGGGATGTGCTTTTCGTCTTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGAAAGTTAGAAGAGGCTATGAGAAAACATTTGCCTAACCTCTTTCAAGAACAACCTGATTTACTCCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAAATGGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAAGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGAAAATTTAAGATGGAATAATGTTTGTGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTGTTGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTCGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGCTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATCAGTGAATTGAACATACTTCTTGAAGCATTGGAGGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTCGGTCTGGCACTCAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCCTTGGGAATCCTCAATGGAAAGAATTCTTGAGGCAATCTTCATTATTACCAACTCTAACCGCTTTTGACAGCCCTTCTCATCATGCCAAAAAGTTATCTGAAGTTACTGCTTCCTTTTCAGAAGTTAAGAAGGTAATTTCCACAGTTGACGGATCTGGGAAGGAAATTGAGCAGCAAAATCATCAAATTGAGGTGAAAAAAGAAAACCATGACCTTGTGGCAACCAATTCAAGACATGAAGATTCACAGTCCTGTAAGGAAGATACAAATGCTCTGAATTTAGTAGAAGTGAAAAATACAACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATCCAGACCGGTTCACTGAGATTGATTCCAAGGCCAGCCTGTGCAACTACGATGAAAATGCCATTTTGCACACTCCCGTGACTGATGCAACGGCCATGGGAGAAAAGGAGGTCAACTTGTTGACTGAAAAAAGATTGAATAGTTGCCAATCGAGCATTGTGCCTTTAAATAGTAAACAGTTTCAAAACATTAACTTATCAGTTAGAGATGCAGCTAATGCTATTCAGAACACCTCAGATGCAGGATTAAGTCATAGTAATAGAGTATTTCCAGCGTCAACAGACACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAATTGAATGAGGGTAAGCATGGAAATGTGGGAGCAAGTGCTACCTCTTGTGTGTTAGACCCAAGTAGAACTACTGCAAATTTATCTTGCAATCAAGCTAATATGGATAGATTCATGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATTAACTGCAATGTTGAGCCTTTAGAATATGGAATCGTGCTCTCAGGAAAGTCTTGGTCAAACTGTCAGGCCATTTTCCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAGTGTTTTAGATCCGTCAACTTTGTGTTACTATGTTTCTGAAATTCTTGATGCTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGCGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTTGAAATGTTCGGATTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACTGAAAGGAACCACGGGGTTGATTCTAGGCCAGCTGGAGTTGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGTGTGTTAGCTCGACTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3777 41.94 HTLKDVLVLDTVFLTYDIVALISSDMGTELMSVCVEEDSDDFPSVPPGFESYISFSLGKVHNHEKQDSCVPVSLPTVSESQPVKVGSEVEGGNVAKVTRSLRRKPCVNYRQYDYCSDDEIDSTKCLDQNFSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFATRVQRIDKLQNRDSIRKNSRVCSQMRRKRRRSNRKGVDVTTLNGKIGDAGPVEAERFGFDPGPDFTLALFQKYADDFKSQYFSKPLNDTTKGCNASMLQENKHEPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKICCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKMEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLENLRWNNVCGKDGILARAFKTRVEMECARRNLPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSLGNPQWKEFLRQSSLLPTLTAFDSPSHHAKKLSEVTASFSEVKKVISTVDGSGKEIEQQNHQIEVKKENHDLVATNSRHEDSQSCKEDTNALNLVEVKNTTDKMCPENVILLSDDEGDEHKKTISNGLAESSSVKQLGNPDRFTEIDSKASLCNYDENAILHTPVTDATAMGEKEVNLLTEKRLNSCQSSIVPLNSKQFQNINLSVRDAANAIQNTSDAGLSHSNRVFPASTDTDSQKPQTCGSGKLNEGKHGNVGASATSCVLDPSRTTANLSCNQANMDRFMRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNCQAIFPKGFKSRVKFISVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGFEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNHGVDSRPAGVDIVLRGLLKKANLEELNSLYTLLNDNRPTVDQGVLARLLNEEIQSHRR 1258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21067884 21079653 + CaPI482276_11g010900.1 Cam11g1090 140012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1090 1258 SMART fyrn_3 1036 1080 IPR003888 GO:0005634(InterPro)
Cam11g1090 1258 Pfam JmjC domain, hydroxylase 416 532 IPR003347 -
Cam11g1090 1258 ProSiteProfiles JmjN domain profile. 170 211 IPR003349 -
Cam11g1090 1258 SMART JmjN_1 169 210 IPR003349 -
Cam11g1090 1258 ProSiteProfiles FYR domain FYRC motif profile. 1082 1172 IPR003889 GO:0005634(InterPro)
Cam11g1090 1258 SMART fyrc_3 1086 1180 IPR003889 GO:0005634(InterPro)
Cam11g1090 1258 ProSiteProfiles JmjC domain profile. 383 549 IPR003347 -
Cam11g1090 1258 Pfam F/Y-rich N-terminus 1037 1079 IPR003888 GO:0005634(InterPro)
Cam11g1090 1258 SUPERFAMILY Clavaminate synthase-like 384 576 - -
Cam11g1090 1258 ProSiteProfiles FYR domain FYRN motif profile. 1022 1080 IPR003888 GO:0005634(InterPro)
Cam11g1090 1258 MobiDBLite consensus disorder prediction 1176 1202 - -
Cam11g1090 1258 FunFam Putative lysine-specific demethylase JMJ16 1028 1166 - -
Cam11g1090 1258 Gene3D Cupin 155 533 - -
Cam11g1090 1258 PANTHER LYSINE-SPECIFIC DEMETHYLASE 151 961 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cam11g1090 1258 Pfam jmjN domain 171 204 IPR003349 -
Cam11g1090 1258 SMART cupin_9 383 549 IPR003347 -
Cam11g1090 1258 MobiDBLite consensus disorder prediction 948 978 - -
Cam11g1090 1258 MobiDBLite consensus disorder prediction 1175 1204 - -
Cam11g1090 1258 Gene3D - 1030 1166 - -
Cam11g1090 1258 MobiDBLite consensus disorder prediction 948 972 - -
Cam11g1090 1258 Pfam C5HC2 zinc finger 639 690 IPR004198 -
Cam11g1090 1258 Pfam F/Y rich C-terminus 1084 1168 IPR003889 GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0277 Cam-Chr1:3081043 Cam11g1090 Cam-Chr11:21067884 1.90E-93 dispersed
Cam01g0906 Cam-Chr1:10759217 Cam11g1090 Cam-Chr11:21067884 2.20E-236 dispersed
Cam09g0783 Cam-Chr9:7953886 Cam11g1090 Cam-Chr11:21067884 1.40E-175 dispersed
Cam10g0131 Cam-Chr10:2928932 Cam11g1090 Cam-Chr11:21067884 1.50E-53 dispersed
Cam11g1090 Cam-Chr11:21067884 Cam09g1149 Cam-Chr9:12146272 1.50E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52906 PF02373 JmjC 1.80E-44 CL0029 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1090 K11446 - csv:101208186 2291.54