Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1136 ATGGCATCGACTTCCTCGAATTCGCCCTGTGCAGCTTGCAAATTTCTCCGGCGAAAATGCCAACCGGAATGTGTTTTTGCGCCTTATTTTCCGCCGGATCAGCCACAGAAATTCGCCAATGTTCATAAGGTATTCGGAGCCAGCAATGTCACAAAACTTCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCCCTGATTTCACCGCCTTCCACTGTTTCCACCGTCGCTCATGGACAGCGGAACCACCAGCCGGCGTTCAATTTTGCTCGAGATCAACCGCATAGCCTCTATCACGATCAATCTTTTCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGAAGCTTCGACGGCGGTAGCAACTATGACGGACTTTTGGCTGTCAATGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG 657 51.75 MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSTVSTVAHGQRNHQPAFNFARDQPHSLYHDQSFPRDQQQQQMMLRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22193914 22194570 - CaPI482276_11g011360.1 Cam11g1136 140058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1136 218 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Cam11g1136 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 155 - -
Cam11g1136 218 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1406 Cam-Chr1:27604745 Cam11g1136 Cam-Chr11:22193914 9.70E-42 dispersed
Cam01g2552 Cam-Chr1:37130821 Cam11g1136 Cam-Chr11:22193914 3.40E-31 dispersed
Cam02g1388 Cam-Chr2:26559836 Cam11g1136 Cam-Chr11:22193914 2.80E-45 dispersed
Cam06g1875 Cam-Chr6:29809294 Cam11g1136 Cam-Chr11:22193914 8.60E-47 dispersed
Cam09g1974 Cam-Chr9:34402756 Cam11g1136 Cam-Chr11:22193914 3.40E-44 dispersed
Cam10g1558 Cam-Chr10:29261220 Cam11g1136 Cam-Chr11:22193914 2.20E-23 dispersed
Cam11g0603 Cam-Chr11:7578519 Cam11g1136 Cam-Chr11:22193914 7.20E-35 dispersed
Cam11g0632 Cam-Chr11:7851178 Cam11g1136 Cam-Chr11:22193914 1.10E-37 dispersed
Cam11g1136 Cam-Chr11:22193914 Cam10g1288 Cam-Chr10:26329080 5.00E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52907 PF03195 LOB 4.10E-43 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1136 - - - 0.0