Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1142 ATGTTGGATGGTGGTCAAAAATTCACTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCGCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCAAATGAGTCTCATACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGCCGCGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACACTTGATTTAAGGAAGCTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGGAAACTCTACAGAGGTACTTATGATGGTGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACACTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAGTATGCGAAGGGCGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAAAGTCGTTCTGTCCCACTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGTTGATTCATAGGGACTTGAAATCGGACAACCTTTTGATTTTTGCAGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACCTCTATAGCTTTGGTATCGTTCTGTGGGAGCTCATAACTGGAATGCTTCCATTCCAGAATATGACAGCTGTTCAGGCCGCCTTTGCAGTCGTAAACAAAGGAGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTATTGAGCGACATCATGACCCGGTGCTGGGACGCCAACCCTGATGTTAGGCCGTCATTTACCGAGGTGGTCAGAATGCTTGAGAATGCGCAGACTGAGATCATGACGACGGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA 1242 46.38 MLDGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22404977 22412782 + CaPI482276_11g011420.1 Cam11g1142 140064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1142 413 Gene3D Transferase(Phosphotransferase) domain 1 215 408 - -
Cam11g1142 413 FunFam Serine/threonine-protein kinase isoform 1 122 214 - -
Cam11g1142 413 SMART serkin_6 132 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1142 413 Pfam Protein tyrosine and serine/threonine kinase 133 386 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1142 413 PRINTS Tyrosine kinase catalytic domain signature 210 223 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1142 413 PRINTS Tyrosine kinase catalytic domain signature 357 379 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1142 413 PRINTS Tyrosine kinase catalytic domain signature 248 266 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1142 413 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1142 413 PRINTS Tyrosine kinase catalytic domain signature 294 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1142 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1142 413 ProSiteProfiles Protein kinase domain profile. 132 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1142 413 CDD STKc_MAP3K-like 139 386 - -
Cam11g1142 413 Gene3D Phosphorylase Kinase; domain 1 121 214 - -
Cam11g1142 413 FunFam serine/threonine-protein kinase HT1 215 408 - -
Cam11g1142 413 SUPERFAMILY Protein kinase-like (PK-like) 117 386 IPR011009 -
Cam11g1142 413 PANTHER SERINE-THREONINE PROTEIN KINASE 75 388 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2150 Cam-Chr1:34266222 Cam11g1142 Cam-Chr11:22404977 2.10E-16 dispersed
Cam01g2365 Cam-Chr1:35676938 Cam11g1142 Cam-Chr11:22404977 8.40E-79 dispersed
Cam03g0618 Cam-Chr3:7039496 Cam11g1142 Cam-Chr11:22404977 8.10E-73 dispersed
Cam06g1889 Cam-Chr6:29923654 Cam11g1142 Cam-Chr11:22404977 1.20E-61 dispersed
Cam10g0041 Cam-Chr10:2046164 Cam11g1142 Cam-Chr11:22404977 3.80E-70 dispersed
Cam10g1252 Cam-Chr10:25943712 Cam11g1142 Cam-Chr11:22404977 3.70E-60 dispersed
Cam10g1608 Cam-Chr10:29868606 Cam11g1142 Cam-Chr11:22404977 4.00E-30 dispersed
Cam10g2233 Cam-Chr10:35605944 Cam11g1142 Cam-Chr11:22404977 7.50E-65 dispersed
Cam11g1142 Cam-Chr11:22404977 Cam11g1485 Cam-Chr11:27592838 4.90E-42 dispersed
Cam11g1142 Cam-Chr11:22404977 Cam01g1435 Cam-Chr1:27902183 2.30E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85576 PF07714 PK_Tyr_Ser-Thr 2.90E-65 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1142 - - - 0.0