Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1167 ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCGCCGCGCCTAATTCCAACGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAAGGCCACAGCGAACAGGTTGCAGCATCTTTGAGGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCTAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCTGACCCAGAAACAGATGAAGTATATGCTCAAATGACCCTACTGCCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCTCGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCCCCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGGCAACCCAAACGCCATTTGCTAACAACTGGTTGGAGCTTATTTGTCAGTGGAAAGAGACTTCTTGCTGGCGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGACGAGCTAACAGGCAACCAACAAACTTATCATCATCAGTGTTGTCAAGTGATAGTATGCATATTGGTATTCTTGCAGCTGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACTGTCTTCTACAACCCGAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATATTACAAGGCAGTGTCTGCAAACCAAATATCACTCGGAATGCGCTTCAGAATGATGTTCGAAACTGAGGAGTCTGGAACTAGAAGGTATATGGGCACTATTACTGGTATAAGTGATCTTGATCCTGTCCGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGGTGGGATGAGTCGACTGGAGGAGAAAGAAGAAATCGAGTCTCCATATGGGAGATTGAGCCTGTTATTGCTCCATTTTTCATTTGCCCCTCTCCATTTTTGAGATCTAAACGACCGAGGCAACCGGGAATGCCAGATGACGACTCCTCCGATTTGGATGGTATATTTAAAAGAACAATGTTTGGTGACGATTTTTGCATGAAAGATCCACAAGGATATCCTGGCCTAAACTTAGTTCAATGGATGAATATGCAAAATCCATCACTTTCAAATTCAATGCAGCCAAATTATATGCATTCGTTTTCCGGGTCTATGCTTCCAAACCTTGGTGGAGTTGATATTTCTCGGCAACTTGGTTTGTCAAATGCACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAGGCTCAACAGTTAGATCAGCTACCTAAGCTACCGTCAAGTATGAACTCGTTGGGATCCGTGGTGCAGGCACCGCAACAGTTGGATGATATGTCTCAGCAGACCCGACAGAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCACACTAATGGGATCCTACAGCAGCAAACTGCTTTGCAAAACCCGCAGCTTCAGAGAAATGTCCCTCAGAATCTGCAAATGCAGCAGCATCAGCAAATTTTAGGTCAAAATCAACAACAGACTATGAATCAGTCCCCGCTCCCGGAACAGTTAAATCATCAGTTACAAATGTCGGATAATCAGGTTCAAATGCAGATGTTGCAGAAGTTTCAGCAGCAGCAGCAATCAATTTTGGCTCAGCAGTCTGCTCTTCAGCCTTCTCAACTCACCCAACTACCGGAGCAGCAGAGACAGTCAGTGGATGCGTCCCAAAGCTTTTCTAGGTCCATGTCGACTAACCAAATGCTCGACATTCCTCAATCCACCCCAGCTGCAGGCCCTCCATCAAATGCGTTACCGCAGCAGACAGCAAATTGCAATAGCCAGACGAATAATCGATTCTCAAATCAGCATTTGCAACCGAAACTTCCACAACTACAGCAACCACCTCCATCTACTGTACTTTCCGATATGTCTAGGCCAATGGGACTTCCTCCTACCCAAACGAATAATCAGCTCTCTGCAGCTACTAGTAGTTTAATAACAGGAGCAGCAGGGGCTGGTCAATCTGGAATCACTGATGACATACCATCTTGCTCCACGTCACCTTCCACAAACAATTGTCCAAGTTTGGTTCAACCGGTAGCCAATGGAAGGGTTCATCGAACCACGGGATTGGTTGAGGATGTTGCTCAATCAGCTGCAACAATATTCAGTTCAAATACATTGGATACCATGTCACCAAATGCCAACTTAGTGCATAAAGATTTGCCACAGAAGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAGCCATGGAATTTTTGCACAACAAACTTTCTTGAGTGGTGTTGTTGCTCAGACGGATTTCTTAGACACGTCATCCTCCACGACCTCAGCTTGCCTTTCTCAGAATGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTATTTAAAGATAGTACTCAGGATTTGGAGGTACCGACAGATCTCCATAACATTCCGTACGGGGCTCATGTCGATGGACAAATGGTAACACAGTTAAATTCTGATCCTTTGTTAGACAAAGGCATTGGAGGTTTGGGGAAAGATTTCTCCAATAATTTTTCTTCTGGGGCCATGCTCACCACCTACGATGTACAGAAAGATCCTCAACAAGAAATTTCTTCCTCTATAGTTTCCCAATCATTTGGTATTCCAGACATGACATTTAATTCCATGGATTCAACAATTAACGATAACGCCTTCTTGAATAGAAACCAATGGGCTCCTCCACCTCCGTTCCAACGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCACCCGTTACTCGGGTTATGATGAGCTTAAACAAGACCTTGCCCGTAGGTTTGGTATCGAGGGACAATTGGAGGACAGGCAAAAAATAGGCTGGAAACTTGTTTATGTGGATCATGAAAATGACGTTTTACTCGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGTGTACGGAGCATCAAGATCCTTTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGAGATTTCGGCAACGGGCTCAAAGTTCATAGTGTCGAATATCAGTACGGCTACGATTTCCCGTTGCAAGAATCTTGCAGCAATGAAGGAGATATAGCCAACCAACACTCAGCAATGGCTTTTAGCCATTCCCTGGTTAAATTTTCTGGACCTCTTAGCCTAGACAACTTTGAAAGCATAGTTGAGAAGAAGTTGAATTACGATATTGTTGCCATTGTCGTCATCGAGGCTGATCTCAATTGCCACGCCGTAGTGTTATATTATTGTGATGAAGTTTAG 3537 44.73 MKTPANGAAGAAAAPNSNEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPSPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGLSNAQIPQSNNIQFNAQRLLSQAQQLDQLPKLPSSMNSLGSVVQAPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHTNGILQQQTALQNPQLQRNVPQNLQMQQHQQILGQNQQQTMNQSPLPEQLNHQLQMSDNQVQMQMLQKFQQQQQSILAQQSALQPSQLTQLPEQQRQSVDASQSFSRSMSTNQMLDIPQSTPAAGPPSNALPQQTANCNSQTNNRFSNQHLQPKLPQLQQPPPSTVLSDMSRPMGLPPTQTNNQLSAATSSLITGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVANGRVHRTTGLVEDVAQSAATIFSSNTLDTMSPNANLVHKDLPQKTAVKPSLNISKNQSHGIFAQQTFLSGVVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFKDSTQDLEVPTDLHNIPYGAHVDGQMVTQLNSDPLLDKGIGGLGKDFSNNFSSGAMLTTYDVQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGLKVHSVEYQYGYDFPLQESCSNEGDIANQHSAMAFSHSLVKFSGPLSLDNFESIVEKKLNYDIVAIVVIEADLNCHAVVLYYCDEV 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22822635 22830340 - CaPI482276_11g011670.1 Cam11g1167 140089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1167 1178 MobiDBLite consensus disorder prediction 629 689 - -
Cam11g1167 1178 FunFam Auxin response factor 990 1084 - -
Cam11g1167 1178 Pfam B3 DNA binding domain 134 236 IPR003340 GO:0003677(InterPro)
Cam11g1167 1178 Gene3D - 132 235 IPR015300 -
Cam11g1167 1178 ProSiteProfiles PB1 domain profile. 995 1080 IPR053793 -
Cam11g1167 1178 Pfam Auxin response factor 260 343 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam11g1167 1178 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677(InterPro)
Cam11g1167 1178 SUPERFAMILY CAD & PB1 domains 1008 1074 - -
Cam11g1167 1178 MobiDBLite consensus disorder prediction 1 20 - -
Cam11g1167 1178 Gene3D - 298 368 - -
Cam11g1167 1178 SUPERFAMILY DNA-binding pseudobarrel domain 123 263 IPR015300 -
Cam11g1167 1178 Pfam AUX/IAA family 993 1080 IPR033389 -
Cam11g1167 1178 FunFam Auxin response factor 132 236 - -
Cam11g1167 1178 FunFam Auxin response factor 298 369 - -
Cam11g1167 1178 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 1086 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam11g1167 1178 CDD B3_DNA 133 225 IPR003340 GO:0003677(InterPro)
Cam11g1167 1178 Gene3D - 991 1084 - -
Cam11g1167 1178 SMART B3_2 134 236 IPR003340 GO:0003677(InterPro)
Cam11g1167 1178 MobiDBLite consensus disorder prediction 567 587 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g0027 Cam-Chr11:1853117 Cam11g1167 Cam-Chr11:22822635 2.60E-16 dispersed
Cam11g0143 Cam-Chr11:3109179 Cam11g1167 Cam-Chr11:22822635 1.00E-243 dispersed
Cam11g1167 Cam-Chr11:22822635 Cam01g2547 Cam-Chr1:37060138 1.90E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52909 PF02309 AUX_IAA 2.40E-07 CL0072 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1167 - - - 0.0