Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1184 ATGGATACCCCAACCTCCAACCGTAGTCGTAGAACTACCAACAAATCTGATCTCTACTCCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGATAACAATCCCGACGATCGGAATCTTCACCGTCGACGAAGGCCGCCGAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGTGACGACGATGATGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGTGGCGGAGCTCCAATTGACTACGAGGATGACCATGCTTTTGATTTCGATCACGATACCGAAGACTTCGGTACCATGATCGTCAAGACGGATAGGAATCGTCCTCGAAATCGCTCTGTGTCTTCATCAGTTTCGACCATGCCCCGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGGGTATTCTACGTTTGTGGTGAGGTCCACGGCCAGGTCGCGGAACAGGGAATCGGTTAGTGGGACTGTTGTTCGAAGGACCGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACTTGAGGGGTCCACGATGGGCAGAGCGGTCGCGAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACCGAGGAGTGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCGAGTTCGATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGGGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAAGCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTCTCTGCTATTGAAATGGCCGAGGGGCTTCCTCCAAGATCGGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGCTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAGCAAGCACATAGTATTGCTCCAGATGCATCCGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATAGTGGACTTCAGGTAACAAATGAAATGGCAGCTGGTGGCACTTGGAGGAAGCAAGAGCAATCGGGCGCTGAACTTGTAGCAGAAGGTAATTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATTGGCACTGCCGAACCAACTGGTTCCTTACACAATGAGAGCCTATCCATTAGTGTAACTAGAGTCAACTCTAGTGTGCTGGATCGTACCAGAGGTATTGTGAGTAATATTCTTGATGGAAAATCGGATTCCACAATGCATGCATCTTCACCTTCATTTTTGGGTATTCATGAGCATAGCACGTTGAAGAATGAAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAACACTGTACCCATTCCGTTTTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTTGGAGGCATGCAGCACGACCATAGGGGTACTGTAGCTGTCGAAACGCTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGTAGGGGTCAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACAATTCAAAATCTTTGTGATACACTTAGAACTATCCTCCGATTGTAG 2478 46.85 MDTPTSNRSRRTTNKSDLYSTVVIHSNSDSDSDNNPDDRNLHRRRRPPSEGQDLYATMLYKDVDKPRDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMIVKTDRNRPRNRSVSSSVSTMPRKRAGSEEGDDSEEDDGDGYSTFVVRSTARSRNRESVSGTVVRRTAGSRSGSRDGGGGLEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNQDYGDTVPSKPQNSGLQVTNEMAAGGTWRKQEQSGAELVAEGNFGTVIVHDGDENDKVASQLDIGTAEPTGSLHNESLSISVTRVNSSVLDRTRGIVSNILDGKSDSTMHASSPSFLGIHEHSTLKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQHDHRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23339758 23354991 + CaPI482276_11g011840.1 Cam11g1184 140106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1184 825 CDD STKc_MAP4K3_like 255 510 - -
Cam11g1184 825 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 227 787 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Cam11g1184 825 MobiDBLite consensus disorder prediction 115 200 - -
Cam11g1184 825 MobiDBLite consensus disorder prediction 31 50 - -
Cam11g1184 825 SUPERFAMILY Protein kinase-like (PK-like) 253 511 IPR011009 -
Cam11g1184 825 Pfam Protein kinase domain 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1184 825 MobiDBLite consensus disorder prediction 1 101 - -
Cam11g1184 825 FunFam serine/threonine-protein kinase dst1 isoform X1 253 543 - -
Cam11g1184 825 MobiDBLite consensus disorder prediction 213 252 - -
Cam11g1184 825 FunFam Aurora kinase A 248 337 - -
Cam11g1184 825 MobiDBLite consensus disorder prediction 160 183 - -
Cam11g1184 825 ProSiteProfiles Protein kinase domain profile. 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1184 825 ProSitePatterns Protein kinases ATP-binding region signature. 262 285 IPR017441 GO:0005524(InterPro)
Cam11g1184 825 MobiDBLite consensus disorder prediction 1 30 - -
Cam11g1184 825 SMART serkin_6 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1184 825 Gene3D Transferase(Phosphotransferase) domain 1 252 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1184 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0700 Cam-Chr7:14752199 Cam11g1184 Cam-Chr11:23339758 2.50E-209 dispersed
Cam10g1489 Cam-Chr10:28603421 Cam11g1184 Cam-Chr11:23339758 4.90E-49 dispersed
Cam11g1184 Cam-Chr11:23339758 Cam11g1814 Cam-Chr11:30636702 1.30E-70 dispersed
Cam11g1184 Cam-Chr11:23339758 Cam03g1552 Cam-Chr3:30458160 7.80E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam11g1814 . 69 756 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 5.0e-225 777.7
Cam11g1184 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.3e-67 253.4
Cam11g1814 . 69 753 MAP Kinase Kinase Kinase Kinase AT3G15220 65.8 8.0e-231 797.0
Cam11g1184 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.5e-67 254.6
Cam11g1184 . 2 825 MAP Kinase Kinase Kinase Kinase AT1G69220 58.8 5.7e-244 840.9
Cam07g0700 . 1 383 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 1.8e-117 420.6
Cam09g1954 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 5.6e-253 870.5
Cam05g0511 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.5e-96 350.9
Cam10g0085 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 4.5e-248 854.4
Cam10g0085 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 6.1e-247 850.5
Cam10g1392 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 2.0e-132 469.9
Cam10g0085 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.7e-118 422.2
Cam10g1392 . 1 671 MAP Kinase Kinase Kinase Kinase AT1G79640 59.7 1.2e-215 746.5
Cam09g1954 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.6e-103 372.9
Cam10g1392 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.0e-87 320.1
Cam10g0085 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.3e-75 280.0
Cam05g0511 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.0 2.6e-143 505.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85579 PF00069 Pkinase 7.40E-68 CL0016 Cam PK