Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1195 ATGGAGAACATTCTGGACGAGTATGGGTATTACTGGGAAACGAATATGTTTCTGCAGACGCAAGAGTTCGACAGTTGGGGATTGGATGAAGCATTTTACGGTTCTTACGATTCGAGCTCGCCCGACGGAACGCTGTCGTCGTTAGAGGCGTCCAAGAACATCTTATCGGAGAGGAATCGGAGGAAGAAGCTCAACGATAGGCTTCTTGCTCTCAGAGCTGTGGTCCCTAATATCACCAAGATGGACAAGGCGTCGATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGCAAGAGAAGAGAATCGAATCGGAGATTTCAGATCTGGAATCAGGCAAAATCGAGAACAGAACAACAAATGAAGAAGACGACGACCATAACGGCAGTGGAAACTCCAGGAAGAGAACGAACGATTGTAATCGACAAGTACGAGAGAAGCCATCCTCAATCCCGATCAAAATTCTCGATTTGAGTGTGAATTACATGGGAGAGAAGACGATGGTGGTGAGTTTGACGTGCGGAAGAAGAAGCGACGCGGTATTGAAAGTTAGTCAAGTAATTGAATCGCTGAAGCTTAAGATTATTACGGCCAATATCATCGTCGTTGCCAACAGAGTTTTGAATACGCTCTTCCTTGAGGCAGAGAGAGCAGAGGAAGAGGAACTTAAGGAATCGAGCAACTTTGGAAGTAGATCAAACTTTTATAATGCCAATGGCATGGAGCTTAAACAGGCGTATTTGGAGCCAAAAACATCAACTGAATCTTGA 774 45.22 MENILDEYGYYWETNMFLQTQEFDSWGLDEAFYGSYDSSSPDGTLSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAQEKRIESEISDLESGKIENRTTNEEDDDHNGSGNSRKRTNDCNRQVREKPSSIPIKILDLSVNYMGEKTMVVSLTCGRRSDAVLKVSQVIESLKLKIITANIIVVANRVLNTLFLEAERAEEEELKESSNFGSRSNFYNANGMELKQAYLEPKTSTES 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23588468 23598671 - CaPI482276_11g011950.1 Cam11g1195 140117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1195 257 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 49 227 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam11g1195 257 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Cam11g1195 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
Cam11g1195 257 Pfam Helix-loop-helix DNA-binding domain 54 98 IPR011598 GO:0046983(InterPro)
Cam11g1195 257 MobiDBLite consensus disorder prediction 108 144 - -
Cam11g1195 257 Coils Coil 87 114 - -
Cam11g1195 257 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 116 - -
Cam11g1195 257 Gene3D - 47 114 IPR036638 GO:0046983(InterPro)
Cam11g1195 257 MobiDBLite consensus disorder prediction 108 147 - -
Cam11g1195 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 114 IPR036638 GO:0046983(InterPro)
Cam11g1195 257 Coils Coil 202 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1649 Cam-Chr8:22691664 Cam11g1195 Cam-Chr11:23588468 2.50E-12 dispersed
Cam10g0160 Cam-Chr10:3229778 Cam11g1195 Cam-Chr11:23588468 3.50E-10 dispersed
Cam11g1025 Cam-Chr11:19337304 Cam11g1195 Cam-Chr11:23588468 2.10E-11 dispersed
Cam11g1195 Cam-Chr11:23588468 Cam11g1503 Cam-Chr11:27865081 8.70E-13 dispersed
Cam02g2233 Cam-Chr2:34990583 Cam11g1195 Cam-Chr11:23588468 1.50E-16 transposed
Cam10g1322 Cam-Chr10:26746137 Cam11g1195 Cam-Chr11:23588468 3.70E-10 transposed
Cam11g1195 Cam-Chr11:23588468 Cam06g1512 Cam-Chr6:26595007 9.20E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52910 PF00010 HLH 8.00E-11 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1195 - - - 0.0