Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1290 ATGGAACATGAACTAATGAACGGCCAAGATTTCATCTTCCGATCAAAGCTCCCAGACATATACATCCCAAACCACCTCCCTCTCCACACCTATTGCTTTGAACACCTCTCCCAATTCCAGCACCGCCCTTGCCTCATCAACGGCGCCACCGGCGAGGTCCACACCTACGCCGCGGTCAACCTAGCAGCCAGACGTGTCGCTGCCGGGCTGAGCAAGATCGGCGTTGGACAAGGCGACGTCATAATGCTCATGCTCCAAAACAGCCCCGAGTTCGTGTTTGCGTTCCTCGGCGCGTCGTTCGCCGGTGCAATTAGCACCACGGCGAACCCGCTGTACAAGCCAGGGGAGATTGCGAGGCAGGCGGCAACGGCGAGGGCGAAGGTAATAATTACGCAGGCGGAGTTTGTGGAGAAGGTTAGGGGATTTGCTGTGGAAAATGGGGTGAAGATATTGTGTACGGATTCCCCGCCGGCGGGTTGTTTGAGATTCTCGGAGGTTATGGAGGCGGATGAAAATGAGATTCCGGCGGTGAAGATTAATTCAAATGATGTTGTTGCTCTTCCTTTTTCGTCTGGAACTACGGGAATTCCTAAAGGGGTTATGTTAACGCATAAATCTCTTGTCACAAGCGTTGCTCAACAGGTGGATGGAGAGAATCCAAATGTAAACTTGAATAGCAACGATGTGATCATATGTGTTCTTCCATTATTCCATATCTATTCTCTCAACTCCGTTCTCCTCTGTGGACTACGTGTCGGCGCCGCCATTCTCATCCTCCAAAAATACGACATGTCGTCCCTTCTTCACCTCATTCAAACCCACAAGGCCACAATTGCTCCATTCGTTCCTCCCATCGTCTTGGACTTCGCCAAAAATCCCGACATCCACCGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGCGCAGCGCCTATGGGGAAGGACCTTGAGGATACCGTCAAAGCTAGGCTCCCCAATGCCACGCTCGGACAGGGGTATGGAATGACTGAGGCAGGGCCAGTGCTATCTATGTGTTTGGCGTTTGCAAAGGAACCTTTCAAGGTTAAATCAGGTGCGTGCGGGACCGTCGTAAGGAATGCTGAGATGAAGATCATACACCCTGACACTTCCGTATCTTTGCCACGTAATCACCCTGGTGAGATCTGCATACGTGGCTCCCAGATCATGAAAGGTTATCTCAACAACAAACAAGCAACAGAGAAGACTATAGACAAAGACGGATGGCTCCACACAGGAGACTTAGGGTTCATCGACGATAACGACGAGATCTTCATCGTCGATCGATTGAAGGAACTGATCAAATACAAGGGATATCAAGTTGCCCCAGCAGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTTCTGCAGCTGCTGTCATACCTATGGAAGATGAAGCAGCAGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTAATGGTTCCAAGATTAGTGAAAATGATATCAAAAAGTATATTTCGGATCAGGTTATATATTACAAAAAAATCAGAAAGGTTTTGTTTGTGGACTCAATTCCAATTGCCCCTTCAGGCAAGATATTGAGGAAGGTTTTAAAAGCTCAGTTAGAGGCTGGTGCCTTTTAA 1629 48.68 MEHELMNGQDFIFRSKLPDIYIPNHLPLHTYCFEHLSQFQHRPCLINGATGEVHTYAAVNLAARRVAAGLSKIGVGQGDVIMLMLQNSPEFVFAFLGASFAGAISTTANPLYKPGEIARQAATARAKVIITQAEFVEKVRGFAVENGVKILCTDSPPAGCLRFSEVMEADENEIPAVKINSNDVVALPFSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNVNLNSNDVIICVLPLFHIYSLNSVLLCGLRVGAAILILQKYDMSSLLHLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKDLEDTVKARLPNATLGQGYGMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAEMKIIHPDTSVSLPRNHPGEICIRGSQIMKGYLNNKQATEKTIDKDGWLHTGDLGFIDDNDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNISAAAVIPMEDEAAGEIPVAFVVRSNGSKISENDIKKYISDQVIYYKKIRKVLFVDSIPIAPSGKILRKVLKAQLEAGAF 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25467026 25474503 - CaPI482276_11g012900.1 Cam11g1290 140212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1290 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 534 - GO:0016405(PANTHER)
Cam11g1290 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 438 - -
Cam11g1290 542 Gene3D - 438 540 IPR045851 -
Cam11g1290 542 CDD 4CL 22 533 - -
Cam11g1290 542 SUPERFAMILY Acetyl-CoA synthetase-like 12 539 - -
Cam11g1290 542 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Cam11g1290 542 Gene3D - 4 437 IPR042099 -
Cam11g1290 542 FunFam 4-coumarate--CoA ligase 2 439 540 - -
Cam11g1290 542 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Cam11g1290 542 Pfam AMP-binding enzyme 34 401 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0389 Cam-Chr7:5205607 Cam11g1290 Cam-Chr11:25467026 4.30E-11 dispersed
Cam10g0595 Cam-Chr10:9118026 Cam11g1290 Cam-Chr11:25467026 8.90E-24 dispersed
Cam10g1398 Cam-Chr10:27656377 Cam11g1290 Cam-Chr11:25467026 5.80E-208 dispersed
Cam10g1974 Cam-Chr10:33665979 Cam11g1290 Cam-Chr11:25467026 1.00E-103 dispersed
Cam11g1290 Cam-Chr11:25467026 Cam11g1389 Cam-Chr11:26559920 5.20E-108 dispersed
Cam11g1290 Cam-Chr11:25467026 Cam06g1470 Cam-Chr6:26116578 2.10E-202 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1290 K01904 - csv:101210868 974.156