Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1343 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCTCGAATCAAAAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTCCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGTGCAAAGACAATGAACTCGTTACACTTAAAGCACTGTGTACAAAGCTACAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAATGATTTTGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGAAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGAAGGGGTCGTGGACGACCTGCTCGAACAGCCGAAAGGGACAACTTCCAACCTAACCCTGACGTCGACCCTTGCACGTCTATAGAGAACAGGAACAAGAACCCCAACCCAGATGTGCACATGGAGCATCACGTCGAGCCTAGCGAAACACCAAAAGAAGTAGGTGAAGCCAATCAAGCTATCCAAAACTTCGATCTTAATGCGGATGTCATTGCCAGCGAAGACTCCAAGAGTGTACCACCACCACCAGCAGTGTCAGATGCGCCTGTCGAACCAGCTGCGCCTACTACCACCGAGTCCGAGACTAAAACAGCTGACGAATTCCCTGCCTGGCCTCTTTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCTCACGAGTAGATGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA 852 47.54 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGRGRGRGRGRPARTAERDNFQPNPDVDPCTSIENRNKNPNPDVHMEHHVEPSETPKEVGEANQAIQNFDLNADVIASEDSKSVPPPPAVSDAPVEPAAPTTTESETKTADEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEEE 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26136901 26141792 + CaPI482276_11g013430.1 Cam11g1343 140265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1343 283 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Cam11g1343 283 MobiDBLite consensus disorder prediction 174 190 - -
Cam11g1343 283 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cam11g1343 283 MobiDBLite consensus disorder prediction 90 250 - -
Cam11g1343 283 FunFam dr1-associated corepressor homolog 1 86 - -
Cam11g1343 283 MobiDBLite consensus disorder prediction 90 132 - -
Cam11g1343 283 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 179 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Cam11g1343 283 MobiDBLite consensus disorder prediction 159 173 - -
Cam11g1343 283 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2332 Cam-Chr2:35894792 Cam11g1343 Cam-Chr11:26136901 1.40E-57 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52919 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1343 K21752 - csv:101209714 472.626