Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1347 ATGGGAAAGCTTAGCTTGAACTGCTGTAATAGCTTCCTTGAGAATTCAAAACCTTATTTTGCCATGATATCCTTACAATTTGGATATGCTGGCATGAACATCATCTCTAAAGTCTCTCTTAGTAGAGGGATGAGTCATTACGTCCTCGTCGTTTATCGACATGCTTTCGCTACCGCTTCCATTGCTCCCTTCGTTCTCTTCTTCGAACGGAGAGGACAGCCAAGGATAACACTCAAAGTTTTCATTCAAATATTTGTGTTGGCTTTGCTTGGCCCGGTTATCGATCAAAATTTCTACTATGCTGGGCTAAAATATACTTCACCAACTTTCTCTTGTGCCATGAGCAACATGCTGCCTGCAATGACATTTGTGATGGCTGTGATCTTTAGGATGGAAAAATTGGAGATGAAGAAATTGAGATGCCAAGCAAAAGTTTTGGGAACTTTAGTGTCAGTGGCTGGAGCAATGTTGATGACTTTATACAAAGGTCCACTTCTTCAAATGGCTTGGTCTAAAAATTCCCATATCACCAATTCTAATGAAACTTCCAACAACAAAGATTGGTTCAAAGGCTCCATTTTCCTCATCATTGCCACTCTTGCTTGGGCTTCTCTCTTTGTTTTGCAGAATGAGGCATTGAAGACATACAAGAACCATCAACTCACTCTCACCACACTCGTGTGTTTTCTTGGGACTTTGCAAGCCATAGCTGTGACTTTAGTAGCCGAGCACAAAGCTTCTGTTTGGACAATTGGTTGGGACATGAATCTTCTTGCTGCTGCCTATGCTGGAATTGTGACATCAAGTATTTCATACTATGTACAAGGGTTGGTGATGAAAAAGAGAGGACCTGTATTTACAACTGCATTTAGTCCTTTGATTATGATACTTGTGGCCATCATGGGCTCTCTCATCCTTGCTGAAAAGATTTTTCTTGGAGGAATAATAGGATCCATCTTGATAGTGTTTGGGCTATATTCAGTACTTTGGGGAAAGCACAAAGAGAATTTGGAGATGATTAAAACTGCTGCTGTTGATGATGAAATACCAAAAGCAATTAAAGCTTCTTCTCAACCAAATATTAATATTAATAATAATAATATTGCAAACAATGTTGAAGCTAATGAGAATGTGACCATGGCACCCAACAAGCTAAGTTCCAATAATAATTCAATTTTCATTTCCATGCCTGCCCTTGAAAACCCCATTAAACCCAACCAAATCCCAAGAGAATAA 1236 39.32 MGKLSLNCCNSFLENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHAFATASIAPFVLFFERRGQPRITLKVFIQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMEKLEMKKLRCQAKVLGTLVSVAGAMLMTLYKGPLLQMAWSKNSHITNSNETSNNKDWFKGSIFLIIATLAWASLFVLQNEALKTYKNHQLTLTTLVCFLGTLQAIAVTLVAEHKASVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFTTAFSPLIMILVAIMGSLILAEKIFLGGIIGSILIVFGLYSVLWGKHKENLEMIKTAAVDDEIPKAIKASSQPNININNNNIANNVEANENVTMAPNKLSSNNNSIFISMPALENPIKPNQIPRE 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26181227 26185244 - CaPI482276_11g013470.1 Cam11g1347 140269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1347 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 334 - -
Cam11g1347 411 PANTHER WAT1-RELATED PROTEIN 20 350 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cam11g1347 411 Pfam EamA-like transporter family 190 329 IPR000620 GO:0016020(InterPro)
Cam11g1347 411 Pfam EamA-like transporter family 19 159 IPR000620 GO:0016020(InterPro)
Cam11g1347 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1347 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0584 Cam-Chr4:19635777 Cam11g1347 Cam-Chr11:26181227 4.70E-120 dispersed
Cam06g0699 Cam-Chr6:9373384 Cam11g1347 Cam-Chr11:26181227 3.70E-70 dispersed
Cam07g0993 Cam-Chr7:24187641 Cam11g1347 Cam-Chr11:26181227 1.00E-49 dispersed
Cam10g1233 Cam-Chr10:25737891 Cam11g1347 Cam-Chr11:26181227 8.70E-43 dispersed
Cam10g1234 Cam-Chr10:25757074 Cam11g1347 Cam-Chr11:26181227 3.20E-37 dispersed
Cam11g1347 Cam-Chr11:26181227 Cam11g1590 Cam-Chr11:28644389 4.70E-93 dispersed
Cam11g1347 Cam-Chr11:26181227 Cam10g1612 Cam-Chr10:29909522 7.60E-128 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam07g1452 . 1 755 Nodulin-like Gene Family AT4G19180 61.4 5.7e-251 864.0
Cam11g1626 . 19 279 Nodulin-like Gene Family AT3G45870 70.5 2.3e-99 359.0
Cam09g1929 . 33 392 Nodulin-like Gene Family AT3G28050 58.8 7.3e-114 407.5
Cam10g0253 . 2 328 Nodulin-like Gene Family AT5G47470 61.6 5.5e-104 374.8
Cam01g0419 . 1 338 Nodulin-like Gene Family AT5G47470 57.8 3.3e-101 365.5
Cam09g1929 . 31 354 Nodulin-like Gene Family AT5G40230 54.3 6.1e-92 334.7
Cam09g1929 . 10 354 Nodulin-like Gene Family AT5G40240 51.3 1.1e-90 330.5
Cam10g1233 . 6 364 Nodulin-like Gene Family AT5G40240 50.1 4.3e-90 328.6
Cam10g1234 . 12 335 Nodulin-like Gene Family AT5G40240 50.8 6.1e-84 308.1
Cam05g2039 . 16 274 Nodulin-like Gene Family AT3G53210 60.6 6.7e-85 310.8
Cam08g1936 . 16 282 Nodulin-like Gene Family AT3G53210 57.7 1.5e-84 309.7
Cam04g0881 . 99 360 Nodulin-like Gene Family AT2G37450 59.8 1.8e-82 302.8
Cam07g0312 . 98 332 Nodulin-like Gene Family AT2G37450 57.0 1.1e-68 256.9
Cam07g0313 . 98 334 Nodulin-like Gene Family AT2G37450 55.3 3.7e-67 251.9
Cam11g1590 . 104 336 Nodulin-like Gene Family AT2G37450 54.5 2.9e-64 242.3
Cam09g2052 . 92 325 Nodulin-like Gene Family AT2G37450 51.5 8.8e-61 230.7
Cam04g0881 . 12 338 Nodulin-like Gene Family AT2G37460 67.6 8.9e-123 437.2
Cam07g0313 . 11 334 Nodulin-like Gene Family AT2G37460 57.4 5.6e-101 364.8
Cam07g0312 . 11 332 Nodulin-like Gene Family AT2G37460 57.5 2.0e-98 356.3
Cam11g1590 . 16 343 Nodulin-like Gene Family AT2G37460 55.2 9.9e-98 354.0
Cam08g0993 . 23 350 Nodulin-like Gene Family AT2G37460 50.5 1.3e-94 343.6
Cam09g2052 . 1 325 Nodulin-like Gene Family AT2G37460 56.1 6.7e-94 341.3
Cam04g0584 . 13 362 Nodulin-like Gene Family AT2G37460 50.7 7.4e-93 337.8
Cam09g2054 . 8 331 Nodulin-like Gene Family AT2G37460 53.1 1.3e-92 337.0
Cam10g1612 . 12 342 Nodulin-like Gene Family AT2G37460 52.7 3.2e-88 322.4
Cam08g1936 . 4 395 Nodulin-like Gene Family AT1G75500 72.5 5.0e-161 564.3
Cam05g2039 . 1 388 Nodulin-like Gene Family AT1G75500 72.7 2.9e-153 538.5
Cam06g1595 . 375 701 Nodulin-like Gene Family AT1G75500 62.2 1.8e-115 412.9
Cam05g2708 . 1 342 Nodulin-like Gene Family AT1G60050 52.9 2.3e-94 342.8
Cam07g0313 . 8 361 Nodulin-like Gene Family AT2G39510 59.6 1.1e-117 420.2
Cam07g0312 . 12 341 Nodulin-like Gene Family AT2G39510 61.9 1.3e-113 406.8
Cam04g0881 . 13 345 Nodulin-like Gene Family AT2G39510 60.5 1.6e-111 399.8
Cam09g2054 . 8 343 Nodulin-like Gene Family AT2G39510 56.2 2.1e-108 389.4
Cam09g2052 . 5 326 Nodulin-like Gene Family AT2G39510 59.8 1.7e-105 379.8
Cam11g1590 . 18 335 Nodulin-like Gene Family AT2G39510 57.3 2.6e-98 355.9
Cam04g0584 . 16 339 Nodulin-like Gene Family AT2G39510 52.0 4.3e-93 338.6
Cam10g1612 . 16 349 Nodulin-like Gene Family AT2G39510 50.7 5.2e-91 331.6
Cam08g0993 . 22 277 Nodulin-like Gene Family AT4G08290 63.5 1.5e-87 319.7
Cam11g1590 . 14 263 Nodulin-like Gene Family AT4G08290 53.3 1.3e-73 273.5
Cam11g1590 . 12 355 Nodulin-like Gene Family AT4G08300 66.6 2.1e-124 442.6
Cam08g0993 . 27 376 Nodulin-like Gene Family AT4G08300 50.7 8.5e-94 340.9
Cam04g0881 . 13 332 Nodulin-like Gene Family AT4G08300 50.2 5.5e-85 311.6
Cam02g0079 . 9 260 Nodulin-like Gene Family AT5G64700 61.1 1.6e-78 289.7
Cam01g1606 . 1 236 Nodulin-like Gene Family AT5G64700 53.1 4.4e-60 228.4
Cam11g1297 . 1 368 Nodulin-like Gene Family AT4G30420 53.8 2.5e-104 375.9
Cam11g1347 . 6 404 Nodulin-like Gene Family AT5G07050 63.6 1.0e-140 496.9
Cam10g1612 . 10 342 Nodulin-like Gene Family AT5G07050 68.0 1.7e-127 453.0
Cam04g0584 . 10 339 Nodulin-like Gene Family AT5G07050 64.6 9.4e-123 437.2
Cam11g1590 . 18 336 Nodulin-like Gene Family AT5G07050 52.4 1.9e-94 343.2
Cam09g2054 . 8 331 Nodulin-like Gene Family AT5G07050 51.1 3.2e-86 315.8
Cam04g0584 . 13 357 Nodulin-like Gene Family AT3G56620 58.6 2.0e-106 382.9
Cam11g1347 . 14 338 Nodulin-like Gene Family AT3G56620 56.7 1.8e-99 359.8
Cam05g2708 . 1 372 Nodulin-like Gene Family AT1G70260 54.9 1.7e-105 379.8
Cam01g1110 . 3 331 Nodulin-like Gene Family AT1G09380 61.8 3.5e-111 398.7
Cam02g1534 . 1 332 Nodulin-like Gene Family AT1G09380 58.4 1.0e-110 397.1
Cam04g0584 . 13 352 Nodulin-like Gene Family AT2G40900 60.9 1.5e-109 393.3
Cam10g1612 . 12 347 Nodulin-like Gene Family AT2G40900 55.4 3.9e-105 378.6
Cam11g1347 . 14 333 Nodulin-like Gene Family AT2G40900 57.2 1.3e-100 363.6
Cam06g1595 . 369 719 Nodulin-like Gene Family AT3G18200 68.5 3.2e-128 455.3
Cam08g1936 . 16 360 Nodulin-like Gene Family AT3G18200 57.7 6.3e-108 387.9
Cam05g2039 . 16 354 Nodulin-like Gene Family AT3G18200 54.6 8.2e-100 360.9
Cam11g1590 . 12 355 Nodulin-like Gene Family AT1G44800 64.6 1.9e-122 436.0
Cam08g0993 . 27 369 Nodulin-like Gene Family AT1G44800 51.3 1.2e-95 347.1
Cam04g0584 . 12 339 Nodulin-like Gene Family AT1G44800 50.3 9.1e-88 320.9
Cam11g1626 . 103 373 Nodulin-like Gene Family AT5G45370 68.7 2.2e-102 369.0
Cam11g1590 . 12 313 Nodulin-like Gene Family AT1G21890 65.7 6.3e-115 411.0
Cam08g0993 . 26 327 Nodulin-like Gene Family AT1G21890 50.8 8.5e-88 320.9
Cam10g1612 . 15 318 Nodulin-like Gene Family AT1G21890 52.9 1.8e-85 313.2
Cam04g0881 . 11 311 Nodulin-like Gene Family AT1G21890 50.3 7.7e-81 297.7
Cam07g1327 . 1 565 Nodulin-like Gene Family AT1G80530 59.4 2.0e-187 652.5
Cam07g1433 . 4 417 Nodulin-like Gene Family AT4G19450 66.0 2.8e-146 515.4
Cam06g0165 . 22 420 Nodulin-like Gene Family AT4G19450 58.0 6.9e-129 457.6
Cam06g1796 . 7 538 Nodulin-like Gene Family AT1G74780 58.2 1.6e-178 622.9
Cam06g1797 . 6 522 Nodulin-like Gene Family AT1G74780 56.3 2.9e-164 575.5
Cam06g1798 . 13 481 Nodulin-like Gene Family AT1G74780 58.5 3.3e-155 545.4
Cam02g1231 . 9 540 Nodulin-like Gene Family AT4G34950 69.8 6.9e-220 760.4
Cam02g0444 . 10 514 Nodulin-like Gene Family AT4G34950 66.0 8.4e-202 700.3
Cam11g0738 . 6 592 Nodulin-like Gene Family AT5G14120 68.9 8.5e-234 806.6
Cam02g1231 . 1 386 Nodulin-like Gene Family AT2G16660 70.1 2.1e-151 532.3
Cam02g0444 . 5 368 Nodulin-like Gene Family AT2G16660 67.7 1.3e-140 496.5
Cam08g1228 . 28 604 Nodulin-like Gene Family AT2G39210 62.9 2.1e-211 732.3
Cam05g2331 . 3 559 Nodulin-like Gene Family AT2G39210 64.3 1.8e-202 702.6
Cam05g2329 . 12 480 Nodulin-like Gene Family AT2G39210 72.5 1.2e-198 689.9
Cam03g0266 . 19 575 Nodulin-like Gene Family AT2G39210 59.6 4.3e-188 654.8
Cam05g2330 . 1 424 Nodulin-like Gene Family AT2G39210 71.0 4.8e-171 598.2
Cam04g0964 . 18 521 Nodulin-like Gene Family AT2G39210 56.3 1.3e-163 573.5
Cam03g0254 . 16 557 Nodulin-like Gene Family AT2G39210 51.2 2.6e-153 539.3
Cam10g1964 . 1 370 Nodulin-like Gene Family AT2G39210 55.4 1.4e-141 500.4
Cam04g0248 . 12 485 Nodulin-like Gene Family AT2G39210 52.9 2.6e-140 496.1
Cam10g1967 . 1 230 Nodulin-like Gene Family AT2G39210 67.0 2.1e-86 317.0
Cam03g0257 . 1 168 Nodulin-like Gene Family AT2G39210 53.0 5.5e-42 169.5
Cam07g1433 . 7 565 Nodulin-like Gene Family AT3G01630 52.8 2.0e-147 519.6
Cam06g0165 . 28 567 Nodulin-like Gene Family AT3G01630 50.4 1.7e-141 500.0
Cam11g0738 . 6 429 Nodulin-like Gene Family AT3G01930 69.4 5.2e-167 584.3
Cam06g1796 . 10 537 Nodulin-like Gene Family AT1G18940 54.5 2.0e-165 579.3
Cam06g1797 . 3 520 Nodulin-like Gene Family AT1G18940 53.5 1.1e-155 547.0
Cam06g1798 . 7 481 Nodulin-like Gene Family AT1G18940 54.5 4.7e-146 515.0
Cam06g1796 . 6 539 Nodulin-like Gene Family AT2G34350 56.2 3.3e-160 562.0
Cam06g1797 . 8 522 Nodulin-like Gene Family AT2G34350 54.2 6.3e-151 531.2
Cam06g1798 . 11 510 Nodulin-like Gene Family AT2G34350 53.1 5.3e-142 501.5
Cam03g0266 . 15 569 Nodulin-like Gene Family AT2G28120 70.1 8.8e-223 770.0
Cam08g1228 . 24 603 Nodulin-like Gene Family AT2G28120 58.3 3.5e-187 651.7
Cam03g0254 . 13 561 Nodulin-like Gene Family AT2G28120 57.4 1.0e-178 623.6
Cam05g2331 . 9 563 Nodulin-like Gene Family AT2G28120 57.4 1.8e-175 612.8
Cam05g2329 . 9 480 Nodulin-like Gene Family AT2G28120 63.6 4.7e-168 588.2
Cam03g0263 . 8 581 Nodulin-like Gene Family AT2G28120 54.1 1.4e-167 586.6
Cam04g0964 . 16 526 Nodulin-like Gene Family AT2G28120 55.8 2.5e-153 539.3
Cam05g2330 . 1 424 Nodulin-like Gene Family AT2G28120 60.9 6.2e-144 508.1
Cam04g0248 . 1 485 Nodulin-like Gene Family AT2G28120 53.1 1.8e-138 490.0
Cam10g1964 . 12 370 Nodulin-like Gene Family AT2G28120 53.0 6.3e-128 454.9
Cam10g1967 . 17 240 Nodulin-like Gene Family AT2G28120 66.5 8.3e-80 295.0
Cam03g0257 . 1 139 Nodulin-like Gene Family AT2G28120 61.2 1.3e-43 174.9
Cam07g1433 . 4 570 Nodulin-like Gene Family AT1G31470 56.4 2.6e-166 582.4
Cam06g0165 . 28 574 Nodulin-like Gene Family AT1G31470 56.5 6.1e-163 571.2
Cam09g0954 . 27 216 Nodulin-like Gene Family AT1G76800 76.3 7.0e-71 263.8
Cam08g1134 . 17 215 Nodulin-like Gene Family AT1G76800 69.8 5.0e-69 257.7
Cam09g1481 . 10 202 Nodulin-like Gene Family AT1G76800 62.7 1.2e-59 226.5
Cam09g1481 . 9 202 Nodulin-like Gene Family AT3G25190 66.8 1.1e-64 243.4
Cam08g1134 . 23 215 Nodulin-like Gene Family AT3G25190 63.2 7.3e-61 230.7
Cam09g0954 . 34 216 Nodulin-like Gene Family AT3G25190 63.2 2.9e-57 218.8
Cam08g1134 . 20 215 Nodulin-like Gene Family AT1G21140 75.5 5.8e-73 270.8
Cam09g0954 . 29 216 Nodulin-like Gene Family AT1G21140 73.4 2.3e-69 258.8
Cam09g1481 . 7 202 Nodulin-like Gene Family AT1G21140 61.7 8.4e-64 240.4
Cam08g1134 . 20 212 Nodulin-like Gene Family AT3G43630 77.2 2.9e-72 268.5
Cam09g0954 . 29 213 Nodulin-like Gene Family AT3G43630 73.0 3.3e-68 255.0
Cam09g1481 . 7 199 Nodulin-like Gene Family AT3G43630 61.7 2.5e-60 228.8
Cam08g1134 . 20 215 Nodulin-like Gene Family AT3G43660 74.0 6.4e-72 267.3
Cam09g0954 . 25 216 Nodulin-like Gene Family AT3G43660 70.3 1.7e-69 259.2
Cam09g1481 . 7 202 Nodulin-like Gene Family AT3G43660 61.2 1.6e-62 236.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000545 3 6 3 2 3 3 6 3 3 3 3 3 5 3 3 6 3 5 6 3 3 4 3 3 4 4 3 4 4 2 109