Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1373 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCAACTCCACCATCAAAACCAAAACCAAAAACGTGGTTCTTCTCAATCACAATCTCAATCTCCATCACCATCTCCATCTCCATCTCCTCAGCAGCACCTTCATGGAGTTCCTTTCGATGGCAGATCACCAATTTCGGCGGCAGCACCAACAGGAGGAGGAGGAGGAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCCTCTCTTGTCTCCCTCCCTCCTCCTTCTTCTTCCAATTCTTCTGTTTCCTCCGCCTCTAACGCCGCCGCCCCTCCTCCCCACCTCGACGCTTCACTCGTCATCGCCACCCGATCCGACACCACCACCACCACCACCGATCCTTCTCCCCGATCTGCTTCCAACAATAACGCTCTCAAGCGTTCCACCAAAGATCGCCACACTAAAGTCGACGGTCGTGGCCGTCGTATACGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAGTTGACTCGTGAATTAGGCCATAAGTCAGATGGCGAAACCATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCCATCATCGCCGCTACTGGCACCGGTACAATCCCTGCTAATTTCTCCTCCTTAAATATCTCAATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCCAAATCCGCTCCCCATTCCTTTCATGGCGCTCTGGCTCTCGCTCACCATCCCCACGCCTATGATGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCAGCACCAGCAACAGCAACAACAGCAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACACTCTCCCGACCGGCGGCGGCGGAGGAGATTCAACCGATAACTATATGAGAAAACGATTTAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGAGAGAGCAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCTTCTTCGTCGGGGCTACTGCGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGACAGGTTCAGGCGGAGGAAATGTAGGGAGTTCTTCTGGCGGCGGCGGCGGCGTTGGGGGAATGGAAGCTCATCAGATGTGGCCATTTTCGACAAGTGGAAACACATTACAGGCGCCGTTGCATTTGATGCCAAGATTCAACATCCCGGAAATTCAAGCGGCGGCGGCAGCAGCAGGAGGACGAGGCGGCGGGCAATTGCAACTGGGTTCGATGTTGATGCAACAAGGTGGCGGAGGAGGCGGTGGTTTGGGAGTAACGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTACTCTAGAGGCGGTGGTTTCAATATTAATTCTGATCATAATCATCCATTGGAGAATCATCCTCACACTCATACTACTGATAGTGGAGATGAAGCTCCAAACACTTCACAATGA 1557 53.18 MELTDMQQSNKQQQQQQQQQHQLHHQNQNQKRGSSQSQSQSPSPSPSPSPQQHLHGVPFDGRSPISAAAPTGGGGGGGAPPFMASISSLVSLPPPSSSNSSVSSASNAAAPPPHLDASLVIATRSDTTTTTTDPSPRSASNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYDEGFAHAALLGFHQHQQQQQQQQQHQLNLMTADQIGDTLPTGGGGGDSTDNYMRKRFREDLFKEDTQSPGESSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSSGGGGGVGGMEAHQMWPFSTSGNTLQAPLHLMPRFNIPEIQAAAAAAGGRGGGQLQLGSMLMQQGGGGGGGLGVTESNLGMLAALNAAYSRGGGFNINSDHNHPLENHPHTHTTDSGDEAPNTSQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26425977 26427533 - CaPI482276_11g013730.1 Cam11g1373 140295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1373 518 MobiDBLite consensus disorder prediction 1 42 - -
Cam11g1373 518 MobiDBLite consensus disorder prediction 126 161 - -
Cam11g1373 518 MobiDBLite consensus disorder prediction 126 145 - -
Cam11g1373 518 MobiDBLite consensus disorder prediction 1 113 - -
Cam11g1373 518 MobiDBLite consensus disorder prediction 146 161 - -
Cam11g1373 518 MobiDBLite consensus disorder prediction 89 108 - -
Cam11g1373 518 Pfam TCP family transcription factor 148 278 IPR017887 -
Cam11g1373 518 MobiDBLite consensus disorder prediction 490 518 - -
Cam11g1373 518 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 100 482 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cam11g1373 518 MobiDBLite consensus disorder prediction 313 353 - -
Cam11g1373 518 ProSiteProfiles TCP domain profile. 149 203 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1373 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1469 Cam-Chr2:27644121 Cam11g1373 Cam-Chr11:26425977 3.90E-29 dispersed
Cam04g1275 Cam-Chr4:26628138 Cam11g1373 Cam-Chr11:26425977 4.40E-34 dispersed
Cam06g1770 Cam-Chr6:28886272 Cam11g1373 Cam-Chr11:26425977 2.00E-37 dispersed
Cam11g1373 Cam-Chr11:26425977 Cam05g2637 Cam-Chr5:33849672 9.20E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g0831 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.1e-68 255.0
Cam02g1469 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cam06g0212 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.4e-66 250.4
Cam05g2637 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 8.4e-41 165.2
Cam04g1275 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cam11g1373 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cam11g1373 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cam05g1519 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cam02g1469 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.5e-64 241.5
Cam01g0831 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.5e-63 237.3
Cam06g1693 . 26 128 TCP Transcription Factor Family AT5G60970 74.0 6.9e-40 161.8
Cam07g1671 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52920 PF03634 TCP 2.00E-39 No_clan Cam TF