Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1389 ATGGCTACTTGCATTCGAGATTTGGTAGAAGAAGAGGAACACATTTTCCGCAGCCAACTTCCTGAGGTCCAAGTGCCTGATAATATCACACTGCCGGAGTTTGTACTTCAGAATGCTGAATCATATGCTGAAAATGTGGCATTTGTGGAAGCCGTGAGTGGAAAGGCTTACACTTACCGCGAAGTTGTGAGAGACATAAATAGATTTTCCAAGGCCTTGTGCTCTCTGAGGTTAAAGAAGGGGCAGGTAGTTATTGTTGTTCTACCCAATGTCGCAGAATATGCCATTGTTGCTTTAGGGATAATGGCTGCTGGAGGTGTGTTTTCTGGTGTGAATCCGGCCGCTCATATATCAGAAATCAAAAAGCAGGTGGAGGTAGCAGAAGCCAAACTTGTCGTCACGAACAGCGCAAACTTTGAAAAGGTGAAGGAATTAAAGCTACCAGTGATCTTATTAGGGGAGGAACTAATTGAAGGTTCCATTAATTGGCACAAACTGCTTGAAGCTGCAGACCGTGCCGGCAACAATTGTGTTAAAGAAGATATTAAGCAGACTGATTTATGTGCCCTCCCTTTCTCATCAGGCACCACAGGGGTTTCCAAAGGCGTTATGCTAACTCACCGAAATCTAATAGCTAATTTGTGTTCGACTCTCTCCGGTGTCCCAAGAGAAATAGAGGGCAAGGTCACGACGTTAGGCCTCATTCCGTTCTTCCATATTTACGGGATCACTGGAATATGTTGTGCTGCACTTAGAAACAAGGGAAAAGTTGTGGTGATGGGAAGATTTGATCTCAGGACCTTCATTAATGCCCTCATAACACAGGAGGTCACATTTGCTCCAATTGTTCCTCCTATCATCCTGGCTTTGGTTAAGAATCCTATTGTCGAAGAATTTGATCTTAGCGGTCTCAAACTTCAGGCTATCATGACTGCAGCTGCTCCGCTCGCACCCGAAGTTCAGACTGCCTTCGAAAGAAAGTTCCCAGGCGTGGACATTCAAGAGGCATATGGACTAACCGAGCATAGCTGCATCACTCTCAACTATGGAAGTATGGGCAAAGATAATCTCACTGCAAAGAAAAACACAGTTGGCCGCATTCTTCCTAATCTAGAAGTCAAATTCATCGATCCAGACAGCGGAAGGTCTCTGCCAAAGAACACTCCGGGTGAAATCTGTGTAAGAAGCCAGTGTGTGATGCAAGGTTACTACAAAAATGAAGAGGAGACTTCAAGGACGATCGATAACAAAGGCTGGATGCACACTGGGGACATTGGATACATCGATGAAGATGGCGATGTGTTTATTGTGGATCGTATCAAGGAATTGATCAAGTACAAAGGCTTTCAAGTTGCTCCAGCTGAGTTAGAGGCAATCCTCCTTGCTCATCCCTCCATTGAAGATGCAGCTGTGGTGCCGCTGCCAGACGAAGAAGCCGGTGAGATCCCAGCAGCAAGTGTTGTGATGGCTCCGAATTCGAAAGAAACTGAAGATGAAATAATCAAACATGTTGCCTCAAATGTTGCGCATTACAAGAAAGTTAGGCTCGTTCATTTTGTGGACACTATCCCGAAGTCGCCTTCTGGGAAAGTTATGAGAAGGTTGATCAAAGAGAAGATGCTCGAAAAGATTCGAGCTGAATCGGCCTCTTAG 1653 45.13 MATCIRDLVEEEEHIFRSQLPEVQVPDNITLPEFVLQNAESYAENVAFVEAVSGKAYTYREVVRDINRFSKALCSLRLKKGQVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVEVAEAKLVVTNSANFEKVKELKLPVILLGEELIEGSINWHKLLEAADRAGNNCVKEDIKQTDLCALPFSSGTTGVSKGVMLTHRNLIANLCSTLSGVPREIEGKVTTLGLIPFFHIYGITGICCAALRNKGKVVVMGRFDLRTFINALITQEVTFAPIVPPIILALVKNPIVEEFDLSGLKLQAIMTAAAPLAPEVQTAFERKFPGVDIQEAYGLTEHSCITLNYGSMGKDNLTAKKNTVGRILPNLEVKFIDPDSGRSLPKNTPGEICVRSQCVMQGYYKNEEETSRTIDNKGWMHTGDIGYIDEDGDVFIVDRIKELIKYKGFQVAPAELEAILLAHPSIEDAAVVPLPDEEAGEIPAASVVMAPNSKETEDEIIKHVASNVAHYKKVRLVHFVDTIPKSPSGKVMRRLIKEKMLEKIRAESAS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26559920 26562184 + CaPI482276_11g013890.1 Cam11g1389 140311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1389 550 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Cam11g1389 550 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Cam11g1389 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
Cam11g1389 550 Gene3D - 13 441 IPR042099 -
Cam11g1389 550 SUPERFAMILY Acetyl-CoA synthetase-like 20 543 - -
Cam11g1389 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 536 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
Cam11g1389 550 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Cam11g1389 550 CDD 4CL 25 534 - -
Cam11g1389 550 Pfam AMP-binding enzyme 37 404 IPR000873 -
Cam11g1389 550 Gene3D - 442 544 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g1290 Cam-Chr11:25467026 Cam11g1389 Cam-Chr11:26559920 5.20E-108 dispersed
Cam11g1389 Cam-Chr11:26559920 Cam11g1598 Cam-Chr11:28707562 4.10E-20 dispersed
Cam11g1389 Cam-Chr11:26559920 Cam10g1398 Cam-Chr10:27656377 3.40E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1389 K01904 - csv:101220731 1001.12