Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1390 ATGCAAAGAAAGATGAAGAGAGGTTTGGTGGTGGTGGTGGTGGTGGTGGTTTGTTTATTGGGAAGTAGCTGGGTGGGAAAGGCAGAGGAAGAGAATTTGAAAGAGGGTTGCAGCAGTGATTTTGAGAAAGTGGTGAGTTGCTTCGAGTACGCGACGGGGAAGGCGGCGGGGCCGAGTAAGGAGTGCTGTGACTCAATTGAAGGTATAAAAGAAAGCAAGCCAAAATGCTTGTGTTTCTTCATACAGCAGACTCATAATGGAAATCAGCAGATTAAGAGCTTGGGCATTCAAGAGATTAAGCTTCTTCAGCTTCCTTCTGTTTGTCACTTGAAAAACTCTAGCGTTAGCTATTGCCCTAAGCTTCTGGGGCTACCCGCAAATTCACCCGACGCTGCTATTTTTAGCAATACAACAACACCAGCGACGCCGGCGTCCTCAACGACGACGAGGACAAGTCCCGACGGCAGTGGCGGAAGTAAGATAGTAGCCAATTCTCCGGCCGGACTGATGGCGGTGGCGATGGCGGTCGTGTTTTTCACAGCCTTCCTTTCGCCGATCACGCGTGAGGCGAATTGGGCCGGACAGAGGCCCACTTATACTGCACCATATAAGAAACGAACGAATTCTGGCAGCCCACTTGCGCTCATTCACGCAACAAAACGGCGTTCGTACTCCCTTTTACCCGACGAGCATCGCCGTTTCCGACTGAAAAAAAGATCCACGCAGCTATTCCGGGTCCAAGAACAAGATCTCTCCGTCATCGTCTTCCTGATAGGTCGCAATATGTCTCAGGTTGATAGCAGGAATTCCTCTGCGGCCAAACGTGCTAGAACTGATGGTAGCCGAAGGGAAGATGATTGGACTTGCCCTAGTTGTGGAAACGTCAATTTTTCATTTAGAACAACTTGCAATATGCGCAATTGCACTCAGCCACGTCCTGCTGATCATAATTCTAAATCTGCTGCCAAGCCCATTCAAGCACCTCAGGGTTACTCCTATTCTGCCCCTTACATGGGGTCAGGTGCACCCTCTTCAATGTATCCTGGTGTACCACCATATGGTTCTTCCATATTCAATGGTTCATCTATACCTCCCTATGATGTGCCATTTTCTGGGGGATCAGCATATCATTACAACTACGGCAGCCGGTTTTCTGCGGGCAGCCCCTACAGACCCTTGCACTTATCTGGGCCTGCACCTTATTCAAGTGGATCTATGATGGGAAATAGTGCAGTGTATGGTATGCCACCCATAATGGATCGCTATGGCATGGCTTTGCCAATGGGCCCTGGTGCCATGGGTCCAAGGCCTGGCTTTTTTCCAGATGATATGTCTCAGAAGAAGGGTGCAGACACTACTCGCGACAATGATTGGGCATGCCCAAAATGTGGAAATATCAACTTCTCATTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCGAAACCTGGGTCACAGGGTTCCAAAAACGACAAAAGTTCTAAACAAAAGACGCCAGAGGGTAGCTGGAAATGTGAGAAATGTAACAACATAAATTATCCATTCCGAACCAAGTGCAACAGACAAAATTGTGGAGCAGACAAGCCAGCGGATTCAGAGAAATCCCCATCACCAGCACAGGATGAAAATGATCAGTCTTGTCGTCCTCATGTTGCAGCAGTTGTCAAGACAGTGCCCCAAAGTTCAGAGGATGCATTGGATTAG 1707 48.33 MQRKMKRGLVVVVVVVVCLLGSSWVGKAEEENLKEGCSSDFEKVVSCFEYATGKAAGPSKECCDSIEGIKESKPKCLCFFIQQTHNGNQQIKSLGIQEIKLLQLPSVCHLKNSSVSYCPKLLGLPANSPDAAIFSNTTTPATPASSTTTRTSPDGSGGSKIVANSPAGLMAVAMAVVFFTAFLSPITREANWAGQRPTYTAPYKKRTNSGSPLALIHATKRRSYSLLPDEHRRFRLKKRSTQLFRVQEQDLSVIVFLIGRNMSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGSSIPPYDVPFSGGSAYHYNYGSRFSAGSPYRPLHLSGPAPYSSGSMMGNSAVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKGADTTRDNDWACPKCGNINFSFRTVCNMRKCNTPKPGSQGSKNDKSSKQKTPEGSWKCEKCNNINYPFRTKCNRQNCGADKPADSEKSPSPAQDENDQSCRPHVAAVVKTVPQSSEDALD 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26567124 26575577 - CaPI482276_11g013900.1 Cam11g1390 140312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1390 568 MobiDBLite consensus disorder prediction 525 568 - -
Cam11g1390 568 MobiDBLite consensus disorder prediction 272 286 - -
Cam11g1390 568 CDD AAI_LTSS 46 110 - -
Cam11g1390 568 SUPERFAMILY Ran binding protein zinc finger-like 494 532 IPR036443 -
Cam11g1390 568 SMART zf_4 502 528 IPR001876 -
Cam11g1390 568 SMART zf_4 285 311 IPR001876 -
Cam11g1390 568 SMART zf_4 456 482 IPR001876 -
Cam11g1390 568 Pfam Zn-finger in Ran binding protein and others 500 530 IPR001876 -
Cam11g1390 568 Pfam Zn-finger in Ran binding protein and others 455 485 IPR001876 -
Cam11g1390 568 Pfam Zn-finger in Ran binding protein and others 283 305 IPR001876 -
Cam11g1390 568 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 36 118 IPR036312 -
Cam11g1390 568 MobiDBLite consensus disorder prediction 481 503 - -
Cam11g1390 568 SUPERFAMILY Ran binding protein zinc finger-like 449 486 IPR036443 -
Cam11g1390 568 PANTHER RNA BINDING PROTEIN 389 491 IPR034870 GO:0003712(PANTHER)|GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam11g1390 568 Gene3D - 34 115 IPR036312 -
Cam11g1390 568 MobiDBLite consensus disorder prediction 135 159 - -
Cam11g1390 568 SUPERFAMILY Ran binding protein zinc finger-like 278 314 IPR036443 -
Cam11g1390 568 Pfam Probable lipid transfer 30 118 IPR016140 -
Cam11g1390 568 Gene3D - 275 315 - -
Cam11g1390 568 Gene3D - 445 486 - -
Cam11g1390 568 Gene3D - 491 532 - -
Cam11g1390 568 SMART aai_6 37 118 IPR016140 -
Cam11g1390 568 FunFam ranBP2-type zinc finger protein At1g67325-like 276 315 - -
Cam11g1390 568 MobiDBLite consensus disorder prediction 267 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1390 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40