Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1395 ATGGCTTCCGCTTGTGCTTCTTCCGCCATTGCGGCTGTGGCAATCTCTTCATCCAGTTCCCAGAAAAATGGGTGCCCCAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGGCTGAGAAACTTAACTTCCGCGGCTGCTGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCGACAGACCTCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCACTTGGTCTTGCGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTACACTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTTTTGACAAAGATCGGAATATTGAACACTCCGTCGTGGTACACCGCCGGTGAATTGGAATACTTCACCGACACCACCACTCTGTTCATAGTGGAACTCATTTTCATTGGTTGGGCCGAGGGTAGACGGTGGGCCGACATCCTCAAACCCGGCTGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTCACCGGAACCGACGTCGGATACCCGGGTGGGCTTTGGTTCGACCCGCTCGGGTGGGGAAGCGGATCACCCGAAAAGATCAAGGAATTGAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGCTTTCACACCAAAGTGA 807 56.38 MASACASSAIAAVAISSSSSQKNGCPKASNFLTGKKLRLRNLTSAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26609014 26611337 - CaPI482276_11g013950.1 Cam11g1395 140317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1395 268 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
Cam11g1395 268 SUPERFAMILY Chlorophyll a-b binding protein 59 266 - -
Cam11g1395 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cam11g1395 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
Cam11g1395 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1513 Cam-Chr3:30119407 Cam11g1395 Cam-Chr11:26609014 5.00E-88 dispersed
Cam04g1248 Cam-Chr4:26466273 Cam11g1395 Cam-Chr11:26609014 1.70E-61 dispersed
Cam08g2067 Cam-Chr8:26202949 Cam11g1395 Cam-Chr11:26609014 4.10E-50 dispersed
Cam09g2098 Cam-Chr9:35536908 Cam11g1395 Cam-Chr11:26609014 6.30E-37 dispersed
Cam10g2163 Cam-Chr10:35128765 Cam11g1395 Cam-Chr11:26609014 9.90E-28 dispersed
Cam11g1395 Cam-Chr11:26609014 Cam11g1928 Cam-Chr11:31668378 1.60E-22 dispersed
Cam11g1395 Cam-Chr11:26609014 Cam06g1755 Cam-Chr6:28793862 1.20E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1395 K08908 - csv:101214055 518.079