Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1411 ATGGTTGAAAACAAGCAGTTTCCGAATCGTTTCCCCTACACTTCAGCGTTCGTCGTCCTTGATATACGCTCGCAATCGTTTCTGCATCCTCCTTTAAACGATATGATTTGTAGCAATAGTTGTAGGATCAGTTTTGTTACTAAGACAATGCAGATAGAGGATGTGATTGTTAGCCGAGGCTCTGATTTCTGGATCTTGAGCATGAAGCTGGACACTAGCGGTCTTGAATCGGCCGCTTTTCTCTCTGGCGCGGGCAGTGCTGATCTGCTCAATGGGTTATCCTCGGCGCCATCTTTTGATATTCCAAATGCTACTAATTTTGATGGATTTCAGAAAGAGGCTATTCAGATGGTGAAGCCAGCAAAGGGGACGACAACTCTGGCCTTCATTATCAAGGAAGAAGTCATGGTTGCTGCTGATTCCCGAGCGAGCATGGGAGGGTACATATCATCCCAATCTGTGAAGAAGATCGTTGAAATAAATCCATACATGCTTGGCACAATTGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATCTTGGAATTAAGTGTCGACCACATGAGTTGGCAAACAAGCGTAGAATTTCAGTGACGGGTGCATCCAAGTTGCTGGCTAACATTCTCTATTCGTACCGGGGAATGGGTCTTTCAGTTGGTACCATGATTGCTGGATGGGATGAAACTGGTCCTGGATTGTATTATGTTGACAGTGAAGGAGGAAGATTGAAAGGAATTCGATTTTCAGTTGGATCTGGTTCACCTCATGCATATGGTGTCCTGGACAATGGTTATCGGTACGATTTATCAGTTGAAGAAGCCGCTGAATTGGGTCGAAGAGCAATTTATCATGCAACATTCCGAGACGGGGCCAGCGGTGGCGTTGCAAGTGTTTATTATGTTGGACCAAATGGATGGAAGAAACTATCTGGTGATGATGTTGGAGAACTTCACTACAAATATTATCCGGTTGTGTCTGATACAGTTGAACAGAAAATGCTTGAAGTCGCTCAGTAG 1020 44.8 MVENKQFPNRFPYTSAFVVLDIRSQSFLHPPLNDMICSNSCRISFVTKTMQIEDVIVSRGSDFWILSMKLDTSGLESAAFLSGAGSADLLNGLSSAPSFDIPNATNFDGFQKEAIQMVKPAKGTTTLAFIIKEEVMVAADSRASMGGYISSQSVKKIVEINPYMLGTIAGGAADCQFWHRNLGIKCRPHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGIRFSVGSGSPHAYGVLDNGYRYDLSVEEAAELGRRAIYHATFRDGASGGVASVYYVGPNGWKKLSGDDVGELHYKYYPVVSDTVEQKMLEVAQ 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26782092 26785766 - CaPI482276_11g014110.1 Cam11g1411 140333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1411 339 ProSiteProfiles Proteasome beta-type subunit profile. 123 302 IPR023333 -
Cam11g1411 339 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 124 333 IPR029055 -
Cam11g1411 339 PRINTS Proteasome component signature 252 263 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Cam11g1411 339 PRINTS Proteasome component signature 131 146 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Cam11g1411 339 PRINTS Proteasome component signature 288 299 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Cam11g1411 339 PRINTS Proteasome component signature 263 274 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Cam11g1411 339 Pfam Proteasome subunit 122 302 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Cam11g1411 339 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 116 322 IPR029055 -
Cam11g1411 339 PANTHER METALLOPROTEASE TLDD 119 309 IPR023333 -
Cam11g1411 339 CDD proteasome_beta_type_5 124 311 - -
Cam11g1411 339 FunFam Proteasome subunit beta 124 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1411 K02737 - - csv:101210332 496.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1466 Cam-Chr8:20933287 Cam11g1411 Cam-Chr11:26782092 1.50E-129 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1185 Blo01g00364 Blo16g01195 Bda01g02184 . Bpe13g00527 . . . . Cmo18g00697 . Cma18g00708 . Car18g00654 . Cpe09g00580 . . . . . . . . . . . . . . . . . Cone8ag0741 . . . . Cme10g00645 . . . . . . Bma01g00017 . . . . . . . . . . . . . . . . . Cla11g01353 Cam11g1411 Cec11g1437 Cco11g1432 Clacu11g1568 Cmu11g1388 Cre11g1809 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002048 5 2 1 1 1 2 3 1 2 2 2 2 3 1 2 3 1 2 3 1 2 1 1 2 2 1 2 6 8 1 66