Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1415 ATGTGGGTTCTCTCTACGCGTCTATCTAGGACTCCGCTCGCTTGCGCGACTCTCTTCGATTCATACCGCTCTTCATCCAATCCTACTTTACAGATTACAGGTCGAGGCTCGGATTCAATTTTTTCAATCTCCCCTAGGGTTTTCTTTGGGAGCTATTGGGTGAGGTTTGGTATTTTGATGGCAGCGGGGAGAATGGGGGGTTATCGCGACTATGATATGAAGGACCGGGATTCCAGTTTTGATGTTTCGGGAGTAACTGCGAAAGAAGGATATGAACGGGGGCGGAGCGGTAACCGTGAAAGCAATAAAAGTCGAGGTCGGGATGTTAGAGACAGAATTAGGGTCCGGCAAAAGGATATCAAGGAGAGGGAAGCGGGTAATGGTAGTCTACGATCTTCGAGTAGAAGTGATTCTGGAAGCAGTAGTGGTATTGCTTCTCACGGGTTGAAGCAAAAGGTTTTGCTTGTCAGGACAATGGATAGGGAGCCGGGCGAGCTATCCAGTGAGAGTGGATCTGATGATGCCACTGAGTCCGGATTACGATTTAAAAATAGTGAGTCGGCAAAGGTGGTGGAGAATGGTATTCATTCTCCACTAGAGAAGAAGAGGAAGTTCTCACCAATAGTTTGGGACAGAGACGATAAGGAAGATGCCATTTCCACAAGAAATAAGGTTGCCAAGGCTGCGACTGCTTCATCTGTGCCGTCACCAAAGGAGCAGAAGCAGTCTCCTAATGCAACGTCGGACACTCTTGATGCTATGCCAACGGCAGGTGGTAGAAGTAAGGATCTGGAGTACTTGCAACCTTCCTCTCTTGTTGAACCGTCTGCTGGGGGCCTTGGATCAGATGAATTCTCCGCAAGTGGTTCACCAATGATGCCATCTTCTGCTTTGCTTAGGAAACCATGGCAGAATGATCTTGAAGCAGAAAATTTTGGGGACGATGATTATGCTCCCACAAGGAACATTTCATCCTCTAGATGGGCTGCTGGAAATAACACTCCTGGTGATGAAGGTGAAATTTTAGACGAGGAAATGCCTAAAAGACGAAAGACAACACCAATTTCTGAGTCCTTGGAGGGCATCAAAGTACAAAGAAAATCATTAACTCCAGAGATTGGGGAGATAATGAGACAAGGCTCTGAAGCAGGGACAAGGTCATCTGAATCGACGGAACGTGGTGATCGGTCTCGATCATCTAGTGCAAATCATTACCTTGGTAATGATTTTGAGAAGGACGAAGGCATGGATCTTGGTGATGATTTTCGTAGAATGGATACTAGCAGTAGCAGGTTGGATACTGATTCTGAGGATGAGACAGAATCTCCCGAGGAAGCAGAGCCTAGTGGCCCTCCTCCCCAACGAAGTGTAAATATGCTTCAGGGCTGTAGAAGTGTTGATGAATTTGAGAGGTTGAATAAGATCGATGAAGGAACTTATGGTGTTGTGTATAGAGCCAGAGACAAGAAGTCAGGGGAAATTGTTGCGTTGAAGAAGGTAAAAATGGAAAAGGAACGAGAAGGTTTTCCCATGACTTCTTTGAGAGAAATAAACATTCTTCTATCTTTTCATCACCCTTCAATTGTTGATGTAAAAGAAGTGGTGGTGGGCAGTAGTCTCGATAGCATTTTTATGGTAATGGAGTACATGGAGCATGATCTAAAAGCACTCATGGAGACAATGAAGCAGCCGTTTAGTCAAAGTGAAGTCAAATGTCTGATGCTTCAGTTACTGGAGGGTGTTAAATACCTTCACGATAATTGGGTGCTCCATAGGGATTTAAAAACATCAAATTTACTTATGAATAACCAGGGAGAGTTGAAGATCTGTGATTTTGGACTAGCTCGGCAATATGGGAGCCCCTTGAAAACGTATACACATATGGTTGTTACTCTTTGGTACAGGGCACCTGAACTTTTATTGGGAACAAGACAGTATTCTACAGCAATTGACATGTGGTCCTTGGGTTGTATTATGGCTGAATTATTGTCAAAGCAACCACTGTTTAATGGAAAAACTGAAGTTGATCAACTTGACAAGATATTCCGAACTCTAGGGACACCCAATGAAACAATTTGGCCTGGGTTTTCCAAGCTTCCAGGAGTAAGGGTGAACTTTGTTAAGCACCAGTACAACTTATTGCGTAAGAAATTCCCAGCGACATCATTTACCGGTTCGCCAGTTCTTTCTGATTCAGGATTTGATTTGTTGAACAAACTTCTAACTTACGATCCTGAGAAGAGAATTACAGCTGAGGCCGCTCTTAATCATGAATGGTTCTCAGAAGTTCCTCTTCCAAAGTCTAAAGAATTCATGCCTACTTTTCCTGCTCAGCATGCTCAGGACAGGCGTTTACGGAGAGTAATGAAGAGTCCAGACCCCTTAGAAGAGCAACGCAGAAAGGAGTTGCAGCAAGGGGAATTGGGAACATCTGGCTTCTTGACGTCAATTCTTCTCCTCTGGTCATCGTATAGAAAATGCTTCACTGACACGGCTTGCATGGCAAGAGATGGTTGGTGGGAAGGGGAGGGCGATCTTTGCTTCTCGTTGGCGAAGAATTTGACAGTTACGTTAGTTTTTCAAAGTATCAAAGCTAGCAGGTTGAGGAGCCTACCTGCATTGCTCTGGAAGTTATTAACTTAG 2643 44.49 MWVLSTRLSRTPLACATLFDSYRSSSNPTLQITGRGSDSIFSISPRVFFGSYWVRFGILMAAGRMGGYRDYDMKDRDSSFDVSGVTAKEGYERGRSGNRESNKSRGRDVRDRIRVRQKDIKEREAGNGSLRSSSRSDSGSSSGIASHGLKQKVLLVRTMDREPGELSSESGSDDATESGLRFKNSESAKVVENGIHSPLEKKRKFSPIVWDRDDKEDAISTRNKVAKAATASSVPSPKEQKQSPNATSDTLDAMPTAGGRSKDLEYLQPSSLVEPSAGGLGSDEFSASGSPMMPSSALLRKPWQNDLEAENFGDDDYAPTRNISSSRWAAGNNTPGDEGEILDEEMPKRRKTTPISESLEGIKVQRKSLTPEIGEIMRQGSEAGTRSSESTERGDRSRSSSANHYLGNDFEKDEGMDLGDDFRRMDTSSSRLDTDSEDETESPEEAEPSGPPPQRSVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKSGEIVALKKVKMEKEREGFPMTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKALMETMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLMNNQGELKICDFGLARQYGSPLKTYTHMVVTLWYRAPELLLGTRQYSTAIDMWSLGCIMAELLSKQPLFNGKTEVDQLDKIFRTLGTPNETIWPGFSKLPGVRVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFSEVPLPKSKEFMPTFPAQHAQDRRLRRVMKSPDPLEEQRRKELQQGELGTSGFLTSILLLWSSYRKCFTDTACMARDGWWEGEGDLCFSLAKNLTVTLVFQSIKASRLRSLPALLWKLLT 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26857887 26862846 - CaPI482276_11g014150.1 Cam11g1415 140337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1415 880 ProSiteProfiles Protein kinase domain profile. 469 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1415 880 FunFam Cyclin-dependent kinase G-2 552 791 - -
Cam11g1415 880 Gene3D Transferase(Phosphotransferase) domain 1 552 791 - -
Cam11g1415 880 SMART serkin_6 469 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1415 880 MobiDBLite consensus disorder prediction 154 168 - -
Cam11g1415 880 MobiDBLite consensus disorder prediction 195 222 - -
Cam11g1415 880 MobiDBLite consensus disorder prediction 407 436 - -
Cam11g1415 880 Gene3D Phosphorylase Kinase; domain 1 454 551 - -
Cam11g1415 880 MobiDBLite consensus disorder prediction 225 254 - -
Cam11g1415 880 MobiDBLite consensus disorder prediction 84 458 - -
Cam11g1415 880 Pfam Protein kinase domain 469 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1415 880 MobiDBLite consensus disorder prediction 318 332 - -
Cam11g1415 880 MobiDBLite consensus disorder prediction 92 128 - -
Cam11g1415 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1415 880 FunFam cyclin-dependent kinase G-2 isoform X1 454 551 - -
Cam11g1415 880 CDD STKc_CDC2L1 463 760 IPR045267 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1415 880 MobiDBLite consensus disorder prediction 169 183 - -
Cam11g1415 880 PANTHER CELL DIVISION PROTEIN KINASE 468 760 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0007346(PANTHER)
Cam11g1415 880 MobiDBLite consensus disorder prediction 129 147 - -
Cam11g1415 880 MobiDBLite consensus disorder prediction 341 356 - -
Cam11g1415 880 SUPERFAMILY Protein kinase-like (PK-like) 461 766 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1415 K08818 - - csv:101209096 1329.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1591 Cam-Chr6:27375969 Cam11g1415 Cam-Chr11:26857887 2.80E-69 dispersed
Cam08g2196 Cam-Chr8:27313052 Cam11g1415 Cam-Chr11:26857887 9.30E-245 dispersed
Cam11g0316 Cam-Chr11:4680544 Cam11g1415 Cam-Chr11:26857887 8.90E-35 dispersed
Cam11g0480 Cam-Chr11:6326329 Cam11g1415 Cam-Chr11:26857887 1.30E-62 dispersed
Cam11g1415 Cam-Chr11:26857887 Cam11g1918 Cam-Chr11:31614992 5.30E-70 dispersed
Cam11g1415 Cam-Chr11:26857887 Cam04g1236 Cam-Chr4:26386648 3.50E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85587 PF00069 Pkinase 1.70E-75 CL0016 Cam PK