Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1437 ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCTGGGATTAGGTCCGCATTGAATTACGGTAAAGGAAGAAGCCATGAGGGTATAATCAAGTATGGGTTCTGCCTGGTCAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAAGAACATGAATTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATTTGTTTTCTAACATCTTGAAAGAGGAAGAGTTTTGGGTTGACCCCAACAGCTCCATCTCAAAAGCATATGAAAAGACGGACCAGGCGATTCTATCCCACAGCTCTGACTTGGGTCGTGGTGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGAAGACTATGGGTGGCCAATGTCGGTGATTCACGTGCAGTTCTTTCTAGAGGGGGCGAAGCTGTACAGATGACCATCGATCATGAGCCAAATACAGAACGTCGCACCATTGAGAATAAAGGTGGCTTCGTTTCAAACATGCCAGGAGACGTGCCACGAGTAAACGGCCAGCTAGCAGTTTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCAGATCCTGACATACGTGATGTTAATGTAGACGCCAACACGGACATATTAATTCTCGCCAGCGACGGTCTTTGGAAGGTCATGGCCAATCAAGAAGCGGTCGATATTGCACGAAGAATTAAAGACCCATTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGGAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTTAGATTTAGGTTGGACCGGTCAAACGTCGACTTTGTGACGAGCTTGGATCGAGCATGGGCTGGACTTGGACCGACCTCTGGGCTTCAATTGATGAGGTTGAATATATGGATCATGCTGAACAATTTATGA 957 44.72 MDKLCCFNASYSGIRSALNYGKGRSHEGIIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTERRTIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDVNVDANTDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALEKESKDDISCIVVRFRLDRSNVDFVTSLDRAWAGLGPTSGLQLMRLNIWIMLNNL 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27092904 27096946 + CaPI482276_11g014370.1 Cam11g1437 140359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1437 318 Gene3D - 26 286 IPR036457 -
Cam11g1437 318 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Cam11g1437 318 PANTHER PROTEIN PHOSPHATASE 29 277 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam11g1437 318 FunFam Probable protein phosphatase 2C 39 21 279 - -
Cam11g1437 318 CDD PP2Cc 30 278 IPR001932 -
Cam11g1437 318 SMART PP2C_4 23 276 IPR001932 -
Cam11g1437 318 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Cam11g1437 318 SMART PP2C_SIG_2 42 278 IPR001932 -
Cam11g1437 318 SUPERFAMILY PP2C-like 25 278 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1043 Cam-Chr5:9434930 Cam11g1437 Cam-Chr11:27092904 4.00E-53 dispersed
Cam09g0478 Cam-Chr9:4938292 Cam11g1437 Cam-Chr11:27092904 2.10E-34 dispersed
Cam10g0905 Cam-Chr10:20267856 Cam11g1437 Cam-Chr11:27092904 2.80E-121 dispersed
Cam11g0846 Cam-Chr11:11170124 Cam11g1437 Cam-Chr11:27092904 5.50E-30 dispersed
Cam11g1437 Cam-Chr11:27092904 Cam11g1818 Cam-Chr11:30703321 3.50E-88 dispersed
Cam11g1437 Cam-Chr11:27092904 Cam07g0248 Cam-Chr7:3602918 5.40E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1437 K17506 - csv:101213414 553.132