Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1447 ATGCAATCTGAAGACTCGAAATCCCCTGAATTCCCTATCCCTTCGTCTAATTTCCACACTCCGACCAACTTCCCGCCACCGACTCAACGGCCAACTCCGGCGGCCAGCAATCTGGCCAACAACCCTTCTAGTCAGTCCATAATCCTCTCTCCGGCCCCTCATCCCCAAAGAGTCTCTGTCGTCTCTCCTCCATACCATTTCCAAGTCCCTTCCAAAAGAATCCATTCTCCCGATGATATACGCCACTTCCACGAATCCGATTCCGGTAGAAATTTTCTCGGTTTCATCGTCGCTCTTTCCGAATCAACTCGAGGCCGGAAAATTTCCGATCCTTGCTACCAATCGGACACCATTAATTCCATTGTCTCTATTCTTGATACTCTGATTCAATGGATTGACGATATACCACCGGCGCATATGGCGTCTCGATATGGAAACCTTTCTTATCGGACATGGCATGCTCGGATGGTGGAAAACAGCGATTCTCTTATGCTTCGATTTCTCCCCCAGGATCTTCATTCAGCCACCGTGGAAATTGTGCCCTATTTCACTGATAGCTTCGGGAATTCGAGCCGAATCGACTATGGTACTGGGCACGAGACAAATTTCGCAGCCTGGTTGTATTGCTTGGCGAAATTGGGGACAATCAAAGAGGAGGATTACCCTGCTGTTGTCGTTAGGGTTTTCGTGAAGTACCTTGAGTTAATGAGGAAATTGCAGTTGGTTTATTGTTTGGAGCCTGCGGGTTCCCATGGTGTTTGGGGCCTTGATGATTACCATTTCCTGTCGTACGTTTTTGGATCGTCCCAGTTGATAGACCATAAATATCTGAAACCTAAATCCATTCACAGTCAGGATATACTAGACAATTTTTCGAACGAGTATCTTTACTTCTCGTGTATTTTGTTTATAAAGAAGGTGAAGAAGGGTCCATTTTCAGAGCATTCGCCATTGCTTGATGATATTAGTGGGGTGCCTAATTGGAACAAGGTCAATAGTGGGTTGCTGAAGATGTATAAGGTGGAGGTATTAGAGAAAGTTCCCATTATGCAGCATTTTCTCTTTGGATGGCTCATCAAATGGAAATGGAATGGGTATAGAATTGGCTCTTCTGTTTTCGACAAAATTTTGCTTCTTATTACGAGCTTTCAACATCTGGTTATGAAGAAGAAAGCTCTTTTCCTCCCCTGGTGGGTAGATAGCTCTCTCCCTCTTTTCCCTTCTGCTTTTGCTTTGTGTTCCTGTTCTCGCCGTTTAAGCCGCGGTCGAGAGATGGCAGAGGGAAGCGATTTCAGGCATTGGGACGAGCTAATACCAGACGCTTTGGGGCTAATCTTCAGTAAACTTTCACTCCAAGAGAAACTCACCGTTATTCCTAGGGTCTGCAAATCATGGGCCAAAGCAGTACTCGGACCTTACTGCTGGCAAGAGATTGATATTGAAGAATGGAGCAGTCGAAGGCAACTCGACAATGTTGATCGAATGCTTCAAATGCTGATAAATCGAAGTGGCGGGTCGCTACGCAAGCTCTGCGTTACTGGTCTTCATAACAGCAGCATTTTCTTCTCCATCGCTGATCATGCTGGTTCTCTTCAAACATTGCGACTGCCAAGGAGCAATATAAGCGATGCTGTAGCAGAACAAATTGCCGGAAGGCTTTGTGCAGTTACTTTTTTGGATCTAAGCTATTGTGATAAAATCAGTGCCTGTGGTTTAGAGTCCATAGGAAAGAATTGCAAAGCTTTAGTTGGAATGTGTCGTAACTTGCATCCGCTACATACAGCAGGTATATCCTCCCCGGACGATGAAGCTTATACTATTGCAGCTACAATGCCGAAACTCAAGCATCTTGAAATGGCTTATCACCCTCTTAGCACCAAAAGTTTACTGACAATACTTTCAAGCTGCCCCAACCTCGAGTTCCTTGATTTGAGAGGGTGTTGGGATGTAAGGCTAGAAGACAAGTTTCTTGCAGAGAAGTTCCCAAAACTAAGAGTTTTGGGGCCTCTCGTTAGGGACGTCTACGAGAGAAATGAATGGGATGAAGGCTCAGACTACTCATACATATCAGACGACTTGGCGTGGGACTTTTCTGCAGATTACTTTGACGATGCTGGTAGTTATGACGATCCATGGGACGATGAAGGCAGACTAGAAGGACTAGAGTTGAGATTTTATGAAGGAATTGATGAAGATAATGAAGCCTTTGGTTGGCCTGCCTCCCCTTAA 2229 45.22 MQSEDSKSPEFPIPSSNFHTPTNFPPPTQRPTPAASNLANNPSSQSIILSPAPHPQRVSVVSPPYHFQVPSKRIHSPDDIRHFHESDSGRNFLGFIVALSESTRGRKISDPCYQSDTINSIVSILDTLIQWIDDIPPAHMASRYGNLSYRTWHARMVENSDSLMLRFLPQDLHSATVEIVPYFTDSFGNSSRIDYGTGHETNFAAWLYCLAKLGTIKEEDYPAVVVRVFVKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLSYVFGSSQLIDHKYLKPKSIHSQDILDNFSNEYLYFSCILFIKKVKKGPFSEHSPLLDDISGVPNWNKVNSGLLKMYKVEVLEKVPIMQHFLFGWLIKWKWNGYRIGSSVFDKILLLITSFQHLVMKKKALFLPWWVDSSLPLFPSAFALCSCSRRLSRGREMAEGSDFRHWDELIPDALGLIFSKLSLQEKLTVIPRVCKSWAKAVLGPYCWQEIDIEEWSSRRQLDNVDRMLQMLINRSGGSLRKLCVTGLHNSSIFFSIADHAGSLQTLRLPRSNISDAVAEQIAGRLCAVTFLDLSYCDKISACGLESIGKNCKALVGMCRNLHPLHTAGISSPDDEAYTIAATMPKLKHLEMAYHPLSTKSLLTILSSCPNLEFLDLRGCWDVRLEDKFLAEKFPKLRVLGPLVRDVYERNEWDEGSDYSYISDDLAWDFSADYFDDAGSYDDPWDDEGRLEGLELRFYEGIDEDNEAFGWPASP 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27199430 27205323 + CaPI482276_11g014470.1 Cam11g1447 140369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1447 742 FunFam Serine/threonine-protein phosphatase 2A activator 256 367 - -
Cam11g1447 742 SUPERFAMILY PTPA-like 62 362 IPR037218 GO:0019211(InterPro)
Cam11g1447 742 Gene3D Ribonuclease Inhibitor 429 670 IPR032675 -
Cam11g1447 742 FunFam F-box protein FBW2 433 475 - -
Cam11g1447 742 Pfam Phosphotyrosyl phosphate activator (PTPA) protein 70 361 IPR004327 GO:0019211(InterPro)
Cam11g1447 742 MobiDBLite consensus disorder prediction 1 18 - -
Cam11g1447 742 MobiDBLite consensus disorder prediction 1 50 - -
Cam11g1447 742 CDD PTPA 92 356 IPR004327 GO:0019211(InterPro)
Cam11g1447 742 Gene3D - 256 368 IPR043170 -
Cam11g1447 742 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B 64 362 IPR004327 GO:0000159(PANTHER)|GO:0003755(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0007052(PANTHER)|GO:0008160(PANTHER)|GO:0019211(InterPro)
Cam11g1447 742 SUPERFAMILY RNI-like 460 667 - -
Cam11g1447 742 MobiDBLite consensus disorder prediction 33 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1447 K17605 - - csv:101211071 629.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0864 Cam-Chr10:19489206 Cam11g1447 Cam-Chr11:27199430 8.10E-82 transposed
Cam11g1447 Cam-Chr11:27199430 Cam08g1574 Cam-Chr8:21921548 5.40E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g435 . . . . Bpe02g00115 . . . . . Cma01g01614 Cma09g00566 . . . Cpe06g00430 . . . . . . . . . . . . . . . . . Cone17ag1208 Cone20ag0517 Lsi04g02245 Csa03g04456 Chy04g00246 . . . Bda11g00772 . . Bpe14g00460 . Bma02g00135 . Cmo01g01660 . . . . . . Cpe02g00366 Bhi09g02449 . . . . . . Cla11g01391 Cam11g1447 Cec11g1475 Cco11g1472 Clacu11g1606 Cmu11g1425 Cre11g1845 . . . Cme04g00275