Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1451 ATGGCACTCTCCTTCCTCTCTTCCGTGCCTTCCTTTCTCCCTCTCCTTCCTCCTCCTCCTCAAGCCGCCCTCTCCCCATTTCCTTCGCACACTGTCAGAGTTCGGTGTGCTCAGATCCAAACGGATGCTAACAACGAGGATCGGTTTAGTAGAAGAGATGTTCTTCAAGGTTTTGGTGGTACTCTTGCTCTGGGATTAATGGTGAACTCTGACCTAATGGTGGAACCGGCTTATGCTGCTGATTTAATACAGCGAAGACAGCGATCTGACTTTTTATCAAATATCAAGGGGACCCTTTTTACAGCTATCAAGAAAAATCCAGACGTTGTTCCCTCCCTTTTAACATTGGCACTAAATGATGCCGTGACTTACGACAAGGCCACTAAATCTGGAGGGCCAAATGGATCCATCCGCTTCAGTTCAGAGATTTCCAGACCTGAAAATGAGAAGTTGTCTGCTGCTCTGAGTTTATTAGAGGAAGCAAAGAAGGAGATAGATTCTTATTCAAAGGGTGGACCTATTTCCTACGCAGATCTTATTCAATTGGCAGCACAAAGTGCCACTAAATCCACCTTTCTAGCGTCTGCCATCAGAAAATGTGGTGGGAACGAAGAAAAAGGAAATTTGTTATATACCGCGTATGGCTCCAACGGGCAGTGGGGCTTGTTCGAAAGGCAATTTGGAAGATCAGATGCTGAAGCGCCTGATCCTGAGGGAAGGGTTCCCATATGGGGGAAAGCTAGCGTGCAGGAAATGAAAGATAAGTTCTCTGCTATGGGATTTGGTCCCCGACAGCTAGCTGTTCTGTCTGCATTTCTGGGTCCTGATCAGGCAGCAACTGAGGAGTTACTAGCCTCAGATCCTGATGTTTTTCCATGGGTTCAAAAGTATCAACGTAGCCGTGAAACAGTATCTCAGACTGATTATGAGGTTGATCTAATAACCACTCTTACAAAAATAAGTAGCTTGGGACAGCAGATAAATTACGAGGCTTACACCTATCCAGTTAAGAAAGTTGATTTGAGCAAACTCAAGTTATAG 1041 45.24 MALSFLSSVPSFLPLLPPPPQAALSPFPSHTVRVRCAQIQTDANNEDRFSRRDVLQGFGGTLALGLMVNSDLMVEPAYAADLIQRRQRSDFLSNIKGTLFTAIKKNPDVVPSLLTLALNDAVTYDKATKSGGPNGSIRFSSEISRPENEKLSAALSLLEEAKKEIDSYSKGGPISYADLIQLAAQSATKSTFLASAIRKCGGNEEKGNLLYTAYGSNGQWGLFERQFGRSDAEAPDPEGRVPIWGKASVQEMKDKFSAMGFGPRQLAVLSAFLGPDQAATEELLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSLGQQINYEAYTYPVKKVDLSKLKL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27228814 27234214 - CaPI482276_11g014510.1 Cam11g1451 140373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1451 346 Pfam Peroxidase 97 271 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1451 346 Gene3D - 79 244 - -
Cam11g1451 346 Gene3D - 245 311 - -
Cam11g1451 346 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 278 340 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009535(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Cam11g1451 346 PRINTS Plant ascorbate peroxidase signature 110 125 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1451 346 PRINTS Plant ascorbate peroxidase signature 270 295 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1451 346 PRINTS Plant ascorbate peroxidase signature 128 138 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1451 346 PRINTS Plant ascorbate peroxidase signature 142 166 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1451 346 SUPERFAMILY Heme-dependent peroxidases 77 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1451 346 CDD plant_peroxidase_like 95 343 - -
Cam11g1451 346 FunFam Thylakoid lumenal 29 kDa protein, chloroplastic 247 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1451 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g1451 Cam-Chr11:27228814 Cam03g0204 Cam-Chr3:3016901 8.90E-13 dispersed
Cam11g1451 Cam-Chr11:27228814 Cam01g2091 Cam-Chr1:33929674 5.40E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g445 . . . Bda03g00483 . Bpe04g00436 . . . . Cma01g01622 Cma09g00570 Car01g01236 . . Cpe06g00433 . . . . . . . . . . . . . . . Cone4ag1323 . . . . Csa03g04459 Chy04g00242 . . . . . . . . . Sed13g2145 Cmo01g01665 Cmo09g00557 . . . Car09g00497 . Cpe02g00362 Bhi09g02455 Tan01g3804 Cmetu04g1099 . Hepe01g2140 Mch11g0679 . Cla11g01395 Cam11g1451 Cec11g1479 Cco11g1476 Clacu11g1610 Cmu11g1429 Cre11g1849 . . . Cme04g00270