Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1455 ATGAAGAGATTTGCCCACTCAGATTCCTTGGATTCTTTCATCACCATCTTCTCCCCTAATGATCAACCGAGCTCCAAAACCATAGGCGGCTACAGCAAGGAGTTTCAAGCAATGTTAGACAGTTTGGAGGAAGAAGACAACAGCGAAGACGGCGGCAACGGTGGCGGATCAGCACCGGAGAGAAAACGGCGGCTGAAGGTGGATCAAGTGAAGGTCTTGGAGAGGCATTTTGAAGTGGAAAACAAGTTAGAACCAGAGAGAAAAATGAAGATTGCAGCTGAATTAGAGCTTGAACCAAAGCAAGTTACAATTTGGTTCCAAAATCGCAGAGCCCGTTGGAAAACAAAGCAATTAGAGAGAGATTATGGAGTTCTTAAAGTCAATTACGATGCTCTTAAACTGGACTATGATGTTCTTGAGAAAGAGAATGCTTCTCTTGCTTCAAAGGTCAAAGAGTTGAGGGAAAAAGTAAGGAGAGAAGGAACAGAGATGAAAATTCAAAGAGAAGTGAAAAATGGGTCAGTGGAGAGAGATTCAAACAGAGATGGGAATTCATATATTTCCATGTTGAATTGCTTTGAATTTTCTGGGAAAGTTTATGAGAATCAAACCCAGTTTACAAGGGCAATGAATGATGATGATGATGATCAAAGTTTGGTTAATATAGAAGAGCCTTGCAATTTCTGTTCTGTTGATCAAGCTCCCTCTCTCCACTGTGGAAATCAACACATAAAAAGGAATGAAAAAAGAAAAAAAGAAAAACTTGTGGACCCCATTCTTGGTTTTTGTTTGCCAAAAATCGATTTTTAA 810 39.88 MKRFAHSDSLDSFITIFSPNDQPSSKTIGGYSKEFQAMLDSLEEEDNSEDGGNGGGSAPERKRRLKVDQVKVLERHFEVENKLEPERKMKIAAELELEPKQVTIWFQNRRARWKTKQLERDYGVLKVNYDALKLDYDVLEKENASLASKVKELREKVRREGTEMKIQREVKNGSVERDSNRDGNSYISMLNCFEFSGKVYENQTQFTRAMNDDDDDQSLVNIEEPCNFCSVDQAPSLHCGNQHIKRNEKRKKEKLVDPILGFCLPKIDF 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27273164 27275161 - CaPI482276_11g014550.1 Cam11g1455 140377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1455 269 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 35 215 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cam11g1455 269 SMART HOX_1 59 120 IPR001356 GO:0003677(InterPro)
Cam11g1455 269 Gene3D - 52 121 - -
Cam11g1455 269 Coils Coil 129 156 - -
Cam11g1455 269 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam11g1455 269 SUPERFAMILY Homeodomain-like 50 118 IPR009057 -
Cam11g1455 269 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677(InterPro)
Cam11g1455 269 Pfam Homeobox associated leucine zipper 116 157 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g1455 269 Pfam Homeodomain 61 114 IPR001356 GO:0003677(InterPro)
Cam11g1455 269 CDD homeodomain 61 117 IPR001356 GO:0003677(InterPro)
Cam11g1455 269 MobiDBLite consensus disorder prediction 40 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1455 K09338 - - csv:101209840 320.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0830 Cam-Chr10:18293717 Cam11g1455 Cam-Chr11:27273164 1.40E-31 dispersed
Cam10g1244 Cam-Chr10:25868733 Cam11g1455 Cam-Chr11:27273164 3.10E-24 dispersed
Cam10g1913 Cam-Chr10:33197246 Cam11g1455 Cam-Chr11:27273164 3.90E-15 dispersed
Cam01g1903 Cam-Chr1:32505289 Cam11g1455 Cam-Chr11:27273164 1.10E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g449 . . . . . . . . . . Cma01g01625 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02252 Csa03g04463 Chy04g00238 . . . . . . . . . . Cmo01g01669 . . . . . . Cpe02g00358 Bhi09g02462 Tan01g3812 . . Hepe01g2145 . . Cla11g01398 Cam11g1455 Cec11g1483 Cco11g1480 Clacu11g1614 Cmu11g1433 Cre11g1853 . . . Cme04g00266
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52923 PF00046 Homeodomain 1.00E-15 CL0123 Cam TF