Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1474 ATGGCTTGTAAGTTCCTGTTTCCTCTCTTACTAGCTTCATTTCTTATACTTTTAACCCTTTTCACCTCTTCATTTGCTGCAAATGATTCTCTCACTAATTTTTTCCCTGCAAAATCCATTTGCAAATTCACCTCAAATCCTTCCTACTGCATCACTGTGCTTAAAAAATCCACAGGTGGTAATGTCTACGACTCCGGCCGGTTTTCGATCCGTCATTCTTTATCTAAAGCATCTAGATTCTTTGACTTGATTGAGAAGCATCTTCAAAACACTTCAACTCTACCAAAATCCATCACTGGAGCTCTTACAGATTGTCAGTATCTTGCTCAACTGAATATCAATTTCTTGTCGAATTCGTTTCGGGCCGTTAATGGCACGGATAAAAAGCTAACTTACTCAAAAGCTGATTATATCCAAAGTCTTCTTAGTGCCATTTTAACCAACATTGATACCTGTCTTGATGGTCTAAACACTGTAGCCTCAGGTTCAAGTTTGGAGAAAGACTTGTTAGCCCCACTTATTGATTGTACCAAATCATACAGTCTTTCACTTGATCTTTTTACAAAGGGTTGGGTTCCTAGGAGGAATAGAAACAGAACACTTGGGAAAAAACACCAGCAGTTTAGGAAAGGACCAGTACCGTTGAGAATAATGTCGAGACGCGACCGGGAAGTTTACGACTCGGTGGTGAATCGGAGAAAGCTTTCTTCTTCATCAGATGACGGAGTTTTGGTTAGTGGCATCGTAGTTGTGAGTCAAGATGGCAAAGGAGACTTCCTTAACATCACAGAAGCTATTAATGCAGCTCCAAATAACGCTCTTGCTGCCAATGGCTACTTCTTGATTTACATTATGGCTGGTGTTTACCAAGAGTATGTGTCTATCCCTTCAAAGAAGAAGTACTTGCTGATGATTGGAGATGGTATAAATCAGACTATCATCACAGGCAACCGGAGCGTCGCGGACGGATGGACGACGTTCAACAGTGCAACTTTTGCTGTAGCAGCAGAAGGATTCATGGCAGTAAACATAACCTTCCAAAACACAGCTGGACCCATCAAGGGCCAAGCAGTTGCATTAAGAAGTGGAGCTGATATGTGTGTTTTTTACAGCTGCAGTTTTGAAGGCTACCAAGACACCTTATACACTCATTCCCTCAGACAATTCTTTAGAGAATGTGATATTTATGGCACAGTAGACTTCATATTTGGAAATGCTGCTGTTGTCTTCCAAAACTGTAACATATATCCCCGTCTTCCCCGCCCCGGTCAGACCAACATGATCACGGCTCAAGGCCGATCGGATCCGAACCAAAACACCGGGACTTCGATCCATAACTGCACGATCCGCTCCGCAAGCGATTTGGCTGCAAGTAGTAGCTACATGAACAAGACATATTTGGGAAGGCCATGGAAGAAATATTCAAGAACAGTGTATATGCAAACATTTATAGATGAGTTTATAAATCCTGGTGGTTGGGATCCATGGTCAGGGGAATATTTGAGCACATTGTATTATGGAGAGTATAATAATAGAGGAGGTGGATCAAATACAAAGAACAGAGTTAATTGGTCAGGTTTTCATGTGATTAATAATGCAACAGATGCTGCTTATTTTACAGTTTCAATTTTCTTGGTTGGGGATGTGTGGTTGCCTCCAACATGTGTGCCTTACACTGGAGGCTTGATATAA 1692 41.55 MACKFLFPLLLASFLILLTLFTSSFAANDSLTNFFPAKSICKFTSNPSYCITVLKKSTGGNVYDSGRFSIRHSLSKASRFFDLIEKHLQNTSTLPKSITGALTDCQYLAQLNINFLSNSFRAVNGTDKKLTYSKADYIQSLLSAILTNIDTCLDGLNTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRRNRNRTLGKKHQQFRKGPVPLRIMSRRDREVYDSVVNRRKLSSSSDDGVLVSGIVVVSQDGKGDFLNITEAINAAPNNALAANGYFLIYIMAGVYQEYVSIPSKKKYLLMIGDGINQTIITGNRSVADGWTTFNSATFAVAAEGFMAVNITFQNTAGPIKGQAVALRSGADMCVFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPRPGQTNMITAQGRSDPNQNTGTSIHNCTIRSASDLAASSSYMNKTYLGRPWKKYSRTVYMQTFIDEFINPGGWDPWSGEYLSTLYYGEYNNRGGGSNTKNRVNWSGFHVINNATDAAYFTVSIFLVGDVWLPPTCVPYTGGLI 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27475114 27477768 - CaPI482276_11g014740.1 Cam11g1474 140396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1474 563 SMART PMEI_2 30 186 IPR006501 GO:0004857(InterPro)
Cam11g1474 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 189 IPR035513 -
Cam11g1474 563 Pfam Plant invertase/pectin methylesterase inhibitor 38 185 IPR006501 GO:0004857(InterPro)
Cam11g1474 563 Gene3D - 245 562 IPR012334 -
Cam11g1474 563 PANTHER PECTINESTERASE 14 553 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam11g1474 563 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Cam11g1474 563 Pfam Pectinesterase 249 548 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam11g1474 563 NCBIfam pectinesterase inhibitor domain 9 160 IPR006501 GO:0004857(InterPro)
Cam11g1474 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 190 IPR035513 -
Cam11g1474 563 FunFam Pectinesterase 244 562 - -
Cam11g1474 563 SUPERFAMILY Pectin lyase-like 245 561 IPR011050 -
Cam11g1474 563 CDD PMEI-like_3 39 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0120 Cam-Chr2:2378848 Cam11g1474 Cam-Chr11:27475114 6.60E-151 dispersed
Cam09g2104 Cam-Chr9:35601850 Cam11g1474 Cam-Chr11:27475114 2.60E-78 dispersed
Cam09g2106 Cam-Chr9:35625316 Cam11g1474 Cam-Chr11:27475114 4.20E-76 dispersed
Cam10g0560 Cam-Chr10:8498262 Cam11g1474 Cam-Chr11:27475114 9.50E-93 dispersed
Cam11g0016 Cam-Chr11:1730878 Cam11g1474 Cam-Chr11:27475114 2.70E-81 dispersed
Cam11g1474 Cam-Chr11:27475114 Cam09g0553 Cam-Chr9:5515843 9.00E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1474 K01051 - csv:101205879 980.704