Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1477 ATGTTCCCAAAGCCCCACCACCAACCACCGCCCCATTCCCAGCCCTTTCCCCGTTCTTTTTCCGTCGCCGCCACTCCGCCGCCGCGTGATTCACCAGCCTCCGCCGATGAGGATTCCGCGGCCGGTCCCTCGCCTCTCGCTCACGCCATGGTTCTCAAAGAACCGACCTCCACCGGCGACGGAGCTTCCATCGAGGTTGTACGCCGCCCCCGCGGCCGCCCGCCGGGATCCAAGAACAAGCCGAAGCCAGCGGCCGTCGTTGTCGCCGGCCGCGAGGCCGAGCCGGCGATGAGTCCTTATGTACTCGAAGTCCCCGGCGGCAGCGATGTCGTCGAATCGATTTCCCGATTTTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCTTACGGAACCGTCGCTGACGTCACTCTCCGGCAACCGTCGTCGTCTCCGGTCAGTACAGTCACTTTCCATGGACGATTCGATATTCTATCCGTCTGCGCAACTTTTGTTCCTCACACGACGTCGTTTCCAATTCCTAACGGATTCACCATCACGCTAGCCGGACCGCAGGGCCAGATCTTCGGCGGCTTGGTTGCTGGATCTTTAATCGGCGTCGGAACCGTCTATGTTATAGCCGCTTCATTCAACAATCCGTCGTATCAGCGGCTGCCATCGGAGGATGAGGTCAGAAAATTAACCTTCAGCGATGTTGAAGAAGCTCACTCTCCGATCTCCGGCGGCAAAGATAGCGAAAACACCGCCGCAGCCGCCGCCACAGAGACCTGCGGTTTGCTGCCGATGTACAGCACTCACTCCTCTTCCGACGTAATTTGGACTCCGGCCGCCAGACAACCGCCTCCACCGCACCATCGTCAGTACTAA 870 59.66 MFPKPHHQPPPHSQPFPRSFSVAATPPPRDSPASADEDSAAGPSPLAHAMVLKEPTSTGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAGREAEPAMSPYVLEVPGGSDVVESISRFCRRRNTGLCILNAYGTVADVTLRQPSSSPVSTVTFHGRFDILSVCATFVPHTTSFPIPNGFTITLAGPQGQIFGGLVAGSLIGVGTVYVIAASFNNPSYQRLPSEDEVRKLTFSDVEEAHSPISGGKDSENTAAAAATETCGLLPMYSTHSSSDVIWTPAARQPPPPHHRQY 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27507816 27508685 - CaPI482276_11g014770.1 Cam11g1477 140399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1477 289 CDD DUF296 99 211 IPR005175 -
Cam11g1477 289 MobiDBLite consensus disorder prediction 1 84 - -
Cam11g1477 289 Gene3D - 98 237 - -
Cam11g1477 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cam11g1477 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 54 247 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam11g1477 289 MobiDBLite consensus disorder prediction 1 16 - -
Cam11g1477 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Cam11g1477 289 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Cam11g1477 289 FunFam AT-hook motif nuclear-localized protein 98 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2258 Cam-Chr2:35199122 Cam11g1477 Cam-Chr11:27507816 4.10E-11 dispersed
Cam11g0699 Cam-Chr11:8606729 Cam11g1477 Cam-Chr11:27507816 3.60E-32 dispersed
Cam11g1477 Cam-Chr11:27507816 Cam08g1631 Cam-Chr8:22524887 2.90E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1477 - - - 0.0