Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1479 ATGATATGCACACAGCGCCACCCCCTTCCCCTTTCCCCCAAATCTCTGCTGCTTCATTTCTCGATCTTCATCAGGTTGATTTTAGTTTTTTTAGGTTTGTCAATGGAGAACTTGGATGGAAAATCTTCAGATTCTACGCAATGCGTTCGCGTTGCTGTTAATATCAGACCTTTGATTACACCCGAGCTAATGGTTGGATGCACGGATTGTATTACAGTTGTGCCTGGCGAACCTCAGGTTCAAATTGGCTCACATGTATTCACATACGACAATGTGTATGGTAGTGCTGGATCACCATCTTATGCATTATACGACGATTGCGTTGCTCCACTAGTCGATGCATTATTTCAGGGTTATAACGCTACTGTTCTTGCTTATGGACAGACGGGGTCTGGAAAGACTTACACAATGGGGACGAATTATAGTGGTGAAGGAAGTAATGATGGAGTAATACCCAAAGTAATGGAAAAAATATTCAAAAAGGTCGAGACAAAGAAGGATTCTACCGAATTCTTGATCAGAGTATCATTTATTGAGATATTTAAGGAAGAAGTCTTTGATTTGCTTGATGCAAGTACTTGCCTTAACACAAAGGGTGAGGGGACAAAGCCTTTTGCTCCTCCACGAGTTCCAATACAAATACGAGAAACAGTTAATGGTGGAATCACACTTGTTGGCGTCACCGAGGCCGAAGTTCGCACCACAGAAGAAATGACATCTTACTTGTCTCGTGGTTCATTAGCACGTGCAACTGGAAGTACCAACATGAATAGCCAGTCAAGTCGATCACATGCCATATTTACTATTACCATGGAGCAAAAGAAGAAGCTTGGGCGAGGCATGTCTCATGATGATACATGTGACGACATTCTATGTGCTAAGCTCCACTTGGTGGATCTTGCCGGTTCTGAAAGAGCCAAACGAACAGGTGCCGATGGCATGCGCTTTAAAGAAGGCGTTCATATCAACAAGGGCCTTTTGGCACTTGGCAATGTCATAAGTGCATTGGGAGATGAGAAGAAACGAAGAGAAGGATGTCATGTTCCCTACCGTGATAGCAAGTTAACTCGTTTGCTACAGGATTCTCTTGGTGGCAACAGCAGAACAGTGATGATTGCTTGTGTTAGTCCTGCTGACTCAAATGCAGAGGAGACCTTAAACACGCTAAAATATGCTAATCGTGCTCGCAATATTCAAAATAAAGCAGTTATCAACCGAGATCCTGTAGGAGCTCAAATACAAAAAATGCGAAGTGAAATTGAGCAATTGCAAGCTGAGCTTTTATTCTATCGCGGTGATGCAACTTTACCATATGAGGAGCTGCAGATTCTAAAGCATAAAATATCATTACTTGAAGCAAGCAATGGAGAGTTGTTGCGGGAGCTTCAAGAACGTCGAGTCACTTGCGATCATTTGTCTCAGCGTGCTATTGATGCTCAGGTTGAAAAAGACAAACTTGCCATGATAATTGAATCCGTGCGGAATGGCAAATCTTTAGATGAGATTGAATCCAACTACGATAAGGATTGTGAATTGGTCAAGAGTTATGTTTCAAAAATTCAAGAGCTAGAAGGGGAGGTACTGAGATTGCAAAGCTTTAAGAGTTCAAAACACAGCCGATATGTAGATCTTGTGGAGTCTGATGATGATAGGCCGCAGTCTAGTAACATCTTATTTCCATGTTCAAATGAGCATTCGTCGGAATATGATCCCAAAGCTGTAGATATTTCAGATGGAATGGAAGATCATGAAAAGGAGCTTGAACATTCAACAATGCAAGAACGATTAGACAGGGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGTTTGCTGGTACGGATACCTCTGTTCTAAAACAACATTATGAAAAGAAGGTCCATGAATTGGAACAAGAAAAGAGAGCTTTACAGAAAGAGATCGAGGAACTTAGATGTAATCTTTCGAACATATCTTCTACATCTGATGATGGAGCGCAAAAGTTGAAGCAAGAATATCTGCAGAAACTAAATTTCCTAGAGACTCAGGTCTCGGAGTTGAAGAAGAAACAAGACGCTCAGGCTCAACTATTGAGACAGAAGCAAAAGAGTGATGAGGCAGCAAAAAGATTACAGGATGAGATCCACAGAATTAAGACCCAAAAGGTTCAACTTCAACACAAGATTAAACAGGAATCCGAGCAATTTAGATTATGGAAGGCTTCGAGAGAGAAGGAAGTTCTCCAGCTGAAGAAGGAGGGTAGGAGAAATGAATATGAGATGCACAAGCTCTTAGCTTTGAATCAAAGGCAGAAAATGGTCTTGCAACGAAAGACAGAAGAAGCCGCTCAGGCAACAAAAAGGCTTAAAGAGCTTTTAGAATCTCGAAAGGCAGCACGTGAATCTTCCGGTGGGGGATCAAATGGTCCTGGAATTCAGGCTCTAATGCAGAATATTGAGCACGAGCTTGAAGTTACAGTTAGGGTGCACGAGGTTCGTTCTGAATACGAACGTCAAATGGAAGAGAGGTCTAAAATGGCCAAGGAATTGGCTAAGCTTAAGGAGGAAGAAGATTTACACAGAGGAGCTAAGTTGAGTGATTGTACTCAAACAATGTCACCTGGTGCAAGAAATTCAAGAATTTTTGCCCTCGAAAACATGCTCGCTACATCATCCAGCTCTTTGGTTTCCATGGCTTCACATTTGTCGGAGGCAGAAGAGCGTGAGCGCGTTCTTGGTGGTAGGGGACGTTGGCATCAAGTGCGATCTTTAGCCGATGCAAAGAACATTATGAATTTTTTGATGAATTTAGCATCCTCTTCAAGGTGTTTGCTATGGGATAAAGAGTTTGCTTCTAGAGAGAAGGATTCAGAAATTAGAGAATTGAAACAAAAAATAGTGAATCTTAGTGGCATGCTGAAAAAATCAGAAGCGCAAAAGGCAGAACTTATTCATCAGAACTCGGTTTTGAAAAGATGTTCCCCGGTTAATAGCGGGGGGCATAACTACGATTTACGCAAGCAGGAGCATCGAAATTCTGTCGTCATACCTGCGGACATGGATACATCAGAATCAGATTATGCAGATCTTAGTTCAGATAGCGATGATATTAATTATGATTGGGAGAGATCCATGAAACGACGATTTGATAGGAAAAAAGTCTCTAAAGCTAAGGGTCGTTCAAGCATGGTTGTCTCAGATGGCACAAATAGTACAGAGTTTAACTTGGATAGTTCTGGCGATGGGGTACTTCGTGGGAATGAATCCACTGCTAGCACCATTGTTTGTTGTACTTGTAGCAGATCTTCTTCCTGCAAGACAACAAAGTGCCAATGTAGAGCGAATGGTGGTGCTTGTGGCTTGTCATGTGGTTGCATACCATCAAAGTGTTCAAACAGAGGTAGTAAAAGTGACCGGGACGCATCATTGCAACTGGATTTAACCAGGAATGTTCGAAATGCTATGGAAAACGATGAAACCGATGAGGAGAGTCGTGACCTTGTTTCTCATGGTGCAAGGTTGCTTCAGAATGCATTGGCTGAGAGACCAAGTGACGACGCTCCTCCAGCTGAAGATGGTGGCGCAAAAAGAAAGCCTCTATCAGACATCGGAAACACATTGGTGAAATCAAAGACAAACAAGCCAAACCAGAGAAAGAAATGGCGAAAATCTACCATTCAACTGATTCCAACCCCACAAGCATCTTCCCAACCAGAAAAACCCGAAGCCACCCAGAAGACTGAGAATGATTCAAATGAGGTTGTCAACGTCCCGTTGAAACTTCCCCGAGCTATGCGATCCGCTGCTGCGAACGGCGGGAACCTACTGAGAGAAAGAAACTCCGATCAGCCGGAAGATTCGGTCAGCGGAAACAAAGAGCATGAACTTATTGTTCCAAAAAGAGTGGATGAGAAAGAGAACTGCAACCGTTAA 3930 42.57 MICTQRHPLPLSPKSLLLHFSIFIRLILVFLGLSMENLDGKSSDSTQCVRVAVNIRPLITPELMVGCTDCITVVPGEPQVQIGSHVFTYDNVYGSAGSPSYALYDDCVAPLVDALFQGYNATVLAYGQTGSGKTYTMGTNYSGEGSNDGVIPKVMEKIFKKVETKKDSTEFLIRVSFIEIFKEEVFDLLDASTCLNTKGEGTKPFAPPRVPIQIRETVNGGITLVGVTEAEVRTTEEMTSYLSRGSLARATGSTNMNSQSSRSHAIFTITMEQKKKLGRGMSHDDTCDDILCAKLHLVDLAGSERAKRTGADGMRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTRLLQDSLGGNSRTVMIACVSPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSEIEQLQAELLFYRGDATLPYEELQILKHKISLLEASNGELLRELQERRVTCDHLSQRAIDAQVEKDKLAMIIESVRNGKSLDEIESNYDKDCELVKSYVSKIQELEGEVLRLQSFKSSKHSRYVDLVESDDDRPQSSNILFPCSNEHSSEYDPKAVDISDGMEDHEKELEHSTMQERLDRELKELDKKLEQKEAEMKRFAGTDTSVLKQHYEKKVHELEQEKRALQKEIEELRCNLSNISSTSDDGAQKLKQEYLQKLNFLETQVSELKKKQDAQAQLLRQKQKSDEAAKRLQDEIHRIKTQKVQLQHKIKQESEQFRLWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAQATKRLKELLESRKAARESSGGGSNGPGIQALMQNIEHELEVTVRVHEVRSEYERQMEERSKMAKELAKLKEEEDLHRGAKLSDCTQTMSPGARNSRIFALENMLATSSSSLVSMASHLSEAEERERVLGGRGRWHQVRSLADAKNIMNFLMNLASSSRCLLWDKEFASREKDSEIRELKQKIVNLSGMLKKSEAQKAELIHQNSVLKRCSPVNSGGHNYDLRKQEHRNSVVIPADMDTSESDYADLSSDSDDINYDWERSMKRRFDRKKVSKAKGRSSMVVSDGTNSTEFNLDSSGDGVLRGNESTASTIVCCTCSRSSSCKTTKCQCRANGGACGLSCGCIPSKCSNRGSKSDRDASLQLDLTRNVRNAMENDETDEESRDLVSHGARLLQNALAERPSDDAPPAEDGGAKRKPLSDIGNTLVKSKTNKPNQRKKWRKSTIQLIPTPQASSQPEKPEATQKTENDSNEVVNVPLKLPRAMRSAAANGGNLLRERNSDQPEDSVSGNKEHELIVPKRVDEKENCNR 1309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27527347 27537301 + CaPI482276_11g014790.1 Cam11g1479 140401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1479 1309 PRINTS Kinesin heavy chain signature 118 139 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam11g1479 1309 PRINTS Kinesin heavy chain signature 254 271 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam11g1479 1309 PRINTS Kinesin heavy chain signature 294 312 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam11g1479 1309 PRINTS Kinesin heavy chain signature 348 369 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam11g1479 1309 FunFam kinesin-like protein KIN-4A isoform X1 41 426 - -
Cam11g1479 1309 SMART CXC_2 1091 1135 IPR033467 -
Cam11g1479 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 431 IPR027417 -
Cam11g1479 1309 MobiDBLite consensus disorder prediction 1278 1309 - -
Cam11g1479 1309 CDD KISc_KIF4 48 399 - -
Cam11g1479 1309 Pfam Kinesin motor domain 81 398 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam11g1479 1309 Coils Coil 958 978 - -
Cam11g1479 1309 Coils Coil 413 433 - -
Cam11g1479 1309 SMART kinesin_4 46 406 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam11g1479 1309 ProSitePatterns Kinesin motor domain signature. 293 304 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cam11g1479 1309 Coils Coil 626 660 - -
Cam11g1479 1309 Coils Coil 774 801 - -
Cam11g1479 1309 Gene3D Kinesin motor domain 43 432 IPR036961 -
Cam11g1479 1309 MobiDBLite consensus disorder prediction 1178 1309 - -
Cam11g1479 1309 MobiDBLite consensus disorder prediction 1221 1253 - -
Cam11g1479 1309 Coils Coil 589 620 - -
Cam11g1479 1309 Coils Coil 669 734 - -
Cam11g1479 1309 ProSiteProfiles Kinesin motor domain profile. 48 398 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam11g1479 1309 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 43 1284 IPR027640 GO:0003777(InterPro)|GO:0003777(PANTHER)|GO:0005875(PANTHER)|GO:0007018(InterPro)|GO:0007052(PANTHER)|GO:0051231(PANTHER)
Cam11g1479 1309 Coils Coil 828 855 - -
Cam11g1479 1309 MobiDBLite consensus disorder prediction 546 570 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1479 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1844 Cam-Chr10:32538237 Cam11g1479 Cam-Chr11:27527347 9.50E-63 dispersed
Cam10g2073 Cam-Chr10:34491045 Cam11g1479 Cam-Chr11:27527347 3.50E-44 dispersed
Cam11g0422 Cam-Chr11:5643239 Cam11g1479 Cam-Chr11:27527347 1.70E-55 dispersed
Cam05g2217 Cam-Chr5:30469329 Cam11g1479 Cam-Chr11:27527347 7.30E-260 transposed
Cam06g0512 Cam-Chr6:7208112 Cam11g1479 Cam-Chr11:27527347 3.00E-43 transposed
Cam06g0910 Cam-Chr6:13335362 Cam11g1479 Cam-Chr11:27527347 1.70E-45 transposed
Cam01g1884 Cam-Chr1:32342194 Cam11g1479 Cam-Chr11:27527347 1.30E-29 wgd
Cam11g1479 Cam-Chr11:27527347 Cam08g1623 Cam-Chr8:22435340 1.50E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .