Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1484 ATGCACGGACGGCCGCGCAAGCCTCAGAAGCCGGAGGAAGAAGAAGCTTCGGCGGTGGAAGCCGCAAAGCTTCGAAATCTGCAATCTCAATTGCTCGCAAATCACCACCAAAAGAACTATGCAAAGGAAGCTCTAGAGGTCAGTGCTAATTTGCTGGAAATGAATCCGGATCTGTATACGGCTTGGAACTATAGGAAACTTGCGGTTGAACACTACTTGAAGGAATCTCCATCAGACATAGAGTCGATCAAAGCGATTCTCGACGAGGAACTTAGAGTAGCTGAAAGTGCATTGCGTCAGAACGTCAAGTCGTACGGCGCGTGGTATCATCGAAAATGGATTTTGAGCAAGCGGCATTCCTCCACCGATCATGAGTTGCGACTGCTTGGAAAGTTTCAGAAACTCGACGCTAGGAATTTTCATGCCTGGAACTACAGAAGATTTGTGGCAGGGCTAATGAACATTCCAGAGGAGAAAGAATTGAAGTATACAACAGATATGATAGATACAAATTTCAGCAATTATTCAGCATGGCATAATCGCAGTGCGCTTCTTGCCAAATTGCTGAACAAAAAGGCTGAAGGGTATTTCCCAGTGGAAAAGGTGTTAAATGATGAGTATGAGCTTGTGCACCAAGCTATTTTCACTGATCCGGATGATCAAAGTGGTTGGTTTTATCATCTTTGGCTTCTGGACCAAACGGTGAAAACAAATCCTCCGAGTCTTGTTTCTTCTTGGCCACCTCATAGTTTTAATGTGGCATTATCAAGAACTGGATGTCTGAATGGTCGCACTCTCTCTTCATTTAGTCGTTTCCAATCAGATTCAGGAACAATACCCCTCATTCTTTACTTTGATCAACCAGTTCAAGGAGTTGACTCATCTTCAGTTATTGTTAAATCTACAGCTAATTTAAGAGATCTTATTTGGAAACCACTCTCAAAATGTAACCGTGCTGCCGCCAAAGCTTGGGTTAGTCATCTGAATTTTCCTCAAGAAGAGCTCAATTCTTATTCGGTGGAAGTCAGCATAGGACATTCTCAGAAATTAGTATCTGCAACTGGTTTTCATCATGTGAAACCAACTCATTTTTCTTTTAAAGTGGCTGTGAATTTAGGAGAAACAACCACTAAAGATTGTGCTAACGAAGGGATCAGGTGGAAGGACGAAAACTTTACTAGTTGCGGAATTAGTCCTCAGAATTTTCCATTTGGTTCTTCCGGCAATCCAACCGGTGAGGATAATTATGCACCTTCTACTTCTGAGTGGTGTGCTGAGACTATAAGTAATGAAATAGCTCTGTTCCGAGAATTATTGTCAGAGACCGATTGTAAAATTGGAAAGCTCACTCTTGCTAGATTGTTAATGGCTCATGCAGCAACATCTCCACATGCCAATAAAATTGTCCAACTTGAGGAAGTTCTGGACCTTTACCAAGACCTGATGAAGTTGGACCCATCACATTTTCATTACTACGAGGATGAACACAGCTTAGTTTTATTGAAGAAGCTGACATCTACTAGGGAGTCCTTGTTAAGACACTGCTATTCCTACAAAGACAAGACGTCCCCATATATTGATAGTACTACCTGTCTACGGCTCAATAATTTATCAATTTCACGGATTGAATCTGTAGAAAAACTACTGTGGGTGCAAGTGCTGGACCTCAGCTACAATGAAATTCGATCAATTGAAGGATTGGAGGGCATGCAGCTCCTCTCTTGCTTGAGTTTGAATAACAATAAAATCGGCAATTTTACTACGTTGGAGCCTCTGAGACTGATAAAGTCTTTAAAAGTTTTGGATATTTCATACAACGAGATAGGGTTGCATTCTATCGACACAACCAGATATCTCTTCTCATCTCCCCTGTCTCACTCTGAAGAAAATGATTTGAGCGGTGGTGAATTGGCAATTGATTGTACCGATCTGGCAACTTACTGGGAAGCTTATCTTCTATTCAAAGATCTAAGCTTGGCGCAATTGGATATCGAAGGAAACATGATATCTAGTGAAAGTGCGTCTCCTGAATGTAAAAAGGATTGTAGTTTTAATGATCTACATCAAGTTCGAGATTTGTTAGCAAAGCAGGCAGTAAAAGAAACCAGTGGAGGAATACTTATCTGA 2127 41.37 MHGRPRKPQKPEEEEASAVEAAKLRNLQSQLLANHHQKNYAKEALEVSANLLEMNPDLYTAWNYRKLAVEHYLKESPSDIESIKAILDEELRVAESALRQNVKSYGAWYHRKWILSKRHSSTDHELRLLGKFQKLDARNFHAWNYRRFVAGLMNIPEEKELKYTTDMIDTNFSNYSAWHNRSALLAKLLNKKAEGYFPVEKVLNDEYELVHQAIFTDPDDQSGWFYHLWLLDQTVKTNPPSLVSSWPPHSFNVALSRTGCLNGRTLSSFSRFQSDSGTIPLILYFDQPVQGVDSSSVIVKSTANLRDLIWKPLSKCNRAAAKAWVSHLNFPQEELNSYSVEVSIGHSQKLVSATGFHHVKPTHFSFKVAVNLGETTTKDCANEGIRWKDENFTSCGISPQNFPFGSSGNPTGEDNYAPSTSEWCAETISNEIALFRELLSETDCKIGKLTLARLLMAHAATSPHANKIVQLEEVLDLYQDLMKLDPSHFHYYEDEHSLVLLKKLTSTRESLLRHCYSYKDKTSPYIDSTTCLRLNNLSISRIESVEKLLWVQVLDLSYNEIRSIEGLEGMQLLSCLSLNNNKIGNFTTLEPLRLIKSLKVLDISYNEIGLHSIDTTRYLFSSPLSHSEENDLSGGELAIDCTDLATYWEAYLLFKDLSLAQLDIEGNMISSESASPECKKDCSFNDLHQVRDLLAKQAVKETSGGILI 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27585987 27591032 + CaPI482276_11g014840.1 Cam11g1484 140406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1484 708 Pfam Leucine Rich repeats (2 copies) 551 590 IPR025875 -
Cam11g1484 708 Gene3D Ribonuclease Inhibitor 496 632 IPR032675 -
Cam11g1484 708 ProSiteProfiles Leucine-rich repeat profile. 572 593 IPR001611 GO:0005515(InterPro)
Cam11g1484 708 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 156 190 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cam11g1484 708 SUPERFAMILY L domain-like 501 608 - -
Cam11g1484 708 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 202 236 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cam11g1484 708 FunFam Geranylgeranyl transferase type-2 subunit alpha 1 242 - -
Cam11g1484 708 Pfam Protein prenyltransferase alpha subunit repeat 87 117 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cam11g1484 708 Pfam Protein prenyltransferase alpha subunit repeat 158 187 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cam11g1484 708 Pfam Protein prenyltransferase alpha subunit repeat 203 233 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cam11g1484 708 Pfam Protein prenyltransferase alpha subunit repeat 123 150 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cam11g1484 708 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cam11g1484 708 SUPERFAMILY Protein prenylyltransferase 2 496 - -
Cam11g1484 708 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 1 503 - GO:0004663(PANTHER)|GO:0005737(PANTHER)|GO:0005968(PANTHER)|GO:0018344(PANTHER)
Cam11g1484 708 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 121 155 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cam11g1484 708 Gene3D Protein prenylyltransferase 1 245 - -
Cam11g1484 708 ProSiteProfiles Leucine-rich repeat profile. 550 571 IPR001611 GO:0005515(InterPro)
Cam11g1484 708 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 86 120 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Cam11g1484 708 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1484 K14050 - - csv:101216457 1167.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g527 . Blo12g00733 . . . . . . . . Cma01g01475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01530 . . . . . . . . . . . . . . Cla11g01428 Cam11g1484 Cec11g1516 Cco11g1511 Clacu11g1647 Cmu11g1464 Cre11g1882 . . . .