Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1487 ATGTTTTTGCCTGAATTATCTGCTTTGTTAGACACCCTTGAACAGTCTGCTTGTAATCCGGAGGTTGCCGTTGCTCTCTCTAAGAGCCTGCTCCGCATATTACAACTTTCATCTGAGAGAACTGTTGCTTCATTCAAGACACTGAATGTTGTTCCTCGGTTGCTTAAAGTTGCTTGTGTTCAAGCCCAGGAACATAGAAGATCTGGAAATGTTATTTCATCTGAGATTCATAATGTTGAAGACATTCAGTCTCGAAGTAATCAGGGACATGATTCACGGGAGACAGCCCAAAGTTGTCTTTCATGCTTGGAAACCATCATGGAGGTTTTCACAGAATTTTTCTCAATTGGAGACGAAGCTAAAAGTTTGGTTCTCCTTAATTCAACATCAATTGATTGTCTATTTGATTTATTTTGGCAAGAAAGTTTGAGAGGCCGTGTACTTAAACACACACTTGAGCTCATAAAGATAAAACCAATTTCTGAGGAAGATCAAAAGGCGAAATTGTATATTTGTACTAAATATCTTGAAATGTTTGCACAAATTAAAGAGCGGGAGAAAAGTTCTACGGAGCTCTCTATTGATCTGTTGGTTGGAATCAGAGAGATGGTTCTGAATGATCCTCAGTACTACCAAACTCTGTTCCGTGATGGAGAATGCTTTTTGCATATTGTCTCTTTGTTGAATGGTAATGTCGATGAGGCAAATGGTGAAAAGTTGATTTTGAACGTCCTTCAAACTCTTACTTGTCTGCTAGCTAAAAATGAAGTCTCAAAGGCTTCATTTAGAGCTTTGGCTGGCAAAGGTTACCAGACAATGCAAACTTTGCTTTTGGACTTCTGTCAGTGCCATCCAAGTGATGCACTCTTAACTGCCTTGCTTGATATGCTTGTTGATGGAAATTTTGACTCGAAGTTGTGCCCTATTATACAGAATGAAGACGTGATCATTCTTTATCTGAGTGTTCTGCAGAAGAGCAGTGAGCCACTGCAGCATCAAGGGCTTAATATGTTTCAACAGCTTCTTCGGGATTCTATATCCAATCGAGCGTCTTGTGTGAGAGCAGGAATGCTGACTTTTCTTCTGGATTGGTTTGGTCAAGATAACAACGACGATGTCATCGTGAAAATTGCTCAGTTAATTCAAGTAATAGGGGGGCATAGTGTATCTGGGAAGGATATCCGCAAAATTTTTGCTTTGTTAAGGAGTGAGAAAGTTGGGAAACAGAGACGTTATTGCTCATTGTTGATGGCCAGTATTTTATCAATGCTAACTGAGAAGGGACCAACTGCTTTTTTTGATCTGAGTGGGAACAATTCTGGGATCTTAATTAAAACACCTGTTCAGTGGCCTCTCAATAAAGGATTTTCCTTTTCATGCTGGCTTCGGGTAGAGAACTTTCCAATACATGGAACAATGGGTCTTTTCAGCTTCCTTACTGAAAATGGAAGAGGCTGCTTGGCTGTGCTTGCAAAGAACAAGCTTATTTATGAGTCTATCAATCTGAGGAGACAGAGTGTCAGGTTACATGTTAATGTAGTCAGAAAGAAGTGGCATTTTCTTTGTATAACCCATAGTATTGGAAGAGCATTCTCTGGGGGTAGCTTGTTGAGGTGTTATGTGGACGGTGATCTTGTTTCATCTGAGAGATGCAGATATGCTAAAGTTAATGAACCACTAACAAATTGCACGGTTGGAGCAAAGTTCAATGTGTCTCTGAGTGAAGAAGTTGATACTAAGGAATCTGTTGAAGCTGCATTTCCTTTTCTTGGTCAGATAGGTCCTGTTTATTTGTTTAGTGATGCTATTTCTTCTGAGCAAGTGCAGGGTATTCATTCTCTTGGACCAAGCTATATGTATTCATTTCTTGACAATGACATTGCTACTTTCTCTGAAAATCAATTGCCTAGAGGAATTCTTAATGCTAAAGAGAGTTTGGCATCAAAAATAATCTTCGGCCTTAATGCACAGGCAAGCAGTGGAAAATCATTATTTAATGTTTCACCAACGTTAGATCTCATTTTGGAAAAGAATTCTTTTGAAGCTACTGCTATGGGTGGCACAGAGTTATGCTCAAGACGCTTACTACAGCGGATTATCTACTGTGTTGGGGGTGTCACTGTACTTTTTCCTCTAATTTCTCAGTCTGACAGATATGAAAGTGAAAGTAATGGTCAGGATGTGGATGTGATTGGTACCAAAGAGTGTCTAACAGCTGAAGTTATTGAACTTATTGCTTCTGTCCTTGATGAGAATTTACCAAATCAACATCAGATGCATCTCCTTTCTGGATTCTCCATTCTGGGATTTTTGCTGCAATCGGTCAATCCACAACAACTTAATATGGAAACTCTTGCAGCTTTAAAACATCTTTTCAATGTCATTGCAAACTGTGGATTCTGTGAGCATCTCATTCAAGATGCTATATCTAGCATATTTCTTAATCTCTCAATCTGGATCTACTCTGCTTATGAGGTGCAGCGTGAATTATACTTGTTTCTGATTCAGCAGTTTGATAATGATCCCAGACTGCTCAAGAATCTTTGCCGCCTCCCACTTATTCTTGATATGATTTGTAAGTTTTACTGTGACAAAGCTAAATGTAAATTTGCTTCTGGAAGCAAGACTTCTCTGCATCCACCTGTTGAAGCTCTTGGAGAAAGACCTACTAAGGATGAAATTCGGAAAATTCGTCTTCTTTTACTAAGCCTTGGGGAAATGAGCATTCGGCAAAATATGGTAGCAGCTGATATAAAAGCTCTTATTGCTTTTTTTGAAAGAAACCAGGATGTGACATGCATCGAGGATGTTTTGCATATGGTTATTCGGGCTATAGCTCAAAAGACAGTTCTTGCTTCTTTCCACGAGCAAGTTAATTTCATCGGTGGCTGTCCAATTTTTGTCAATCTTCTACAAAGGGAATTTGAACCTATCAGATTGCTTAGCTTGCAGTTCCTTGGTAGACTTTTGGTCGGTCTTCCTTCCGAGAAGAAAGGACTGAGATTTTTCAATCTCCCAAGTGGAAAAGCTAAATCTGTTCAAGATAGCAATAAGAACACTAGTTTAAGGATGCAACCACTATTCTCAGCTATATCTGATAGGTTGTTTAGGTTTCCGCCAACAGACAATTTATGTGCTGCATTGTTTGATGTTCTTCTTGGGGGTGCAAGTCCCAAACAGGTATTGCAGAAACAAAATCAGTCTGATGGACAAAGAAACAAATCTCCTGGATCTCACTTTGCTGTTCCACAGAGTTTAGTGCTTATTTTCCAGTTCCTATGTAGCTGTGAGGATATTTCTGCAAGACTAAAAATAATCACAGATCTTCTTGATCTTCTTGAGACAAATCCTTCGAATATTGAAGCTTTTATGGAATATGGGTGGAATGCTTGGTTGACAGCCTGTGTCAAGCTTGATGCTTTGCAGCAATACAAAGTTGGGTCATTAGATCAAGTTGATGATAAAATAAATGAGCAGTGTATTATAAGGAAACTATTTTCTGTTGTTCTTTTGCATTGCATATGGTCAGTGAAGGGTGGCTGGCAACAATTAGAAGAAACAGCAACTTTCCTTCTTATGCAGTCTGAGAAAGGCCAGGTCTCCTTTAAGTACTTTCTTCGTGATATGTATGAGGATCTTATTCAGATGTTAGTGGATTTATCTTCTGGGGAGAATATATTTGTTGCACAACCATGTCGAGATAATACATTATACCTTCTAAGGCTTATTGATGACATGCTTATAGCTGAACTTGACCATCAGTTGCCGATTCTAGCGACTGTCTTTGATGTTTCTCTCGACTCCACAGAACTGGAGCTTTACATCTCTGCCTTACATGATGTTTTGCAAGGAGAATCTGATGACGGGACCGCAAGATATTCACAGCATCAAATGGAAGTTAAAGATGACATGATGGATGAAAAGTGGTGGCATCTTTATGATAAATTGTGGATTATTATTAGTGAGATAAATGGCAAGGGACCAAACAAAACTTTGCCGAAATCATCAACATCTGGAGGTCCTACATTTGGTCAAAGAGCCCGTGGATTAGTAGAGTCACTCAACCTTCCTGCTGCAGAGATGGCTGCAGTTGTTGTATCAGGTGGCATAGGCAGTGCATTGGGAGGAAAACCTAACAGAATTGCTGATAAGGCAATGCTCTTGCGCTCGGAGAGGTTCCCGAGAATTATTCTTCGACTTGTGATGCTTTACATTTGCAAGTCTCCTCTTGAAAAAGCATCACGATGTGCACAGCAGTTTATTTCACTTTTACCTTCCCTTGTGGTTACTGATGATGAGCAAAACAAAAATAGGTTGCAGCTATTCATCTGGTCTTTGCTTGCTGTTAGGTCACAGTACAGAATGTTGAATAATGATGCTCGCATTCATGTCATATCACATTTGATTCGAGGAACTGTAAGCTGTTGCAAATCAATACTTGCAAACAGTATAATCAGCACAGATGATTCCTCAGATACTGGTGTTTTTATTAAAGAAACTGGATACATCCACAACCTGATACAAAAAGAACGAGTTACTGCAGCTATGAGGACCAGAGATGAGGACTAG 4569 39.44 MFLPELSALLDTLEQSACNPEVAVALSKSLLRILQLSSERTVASFKTLNVVPRLLKVACVQAQEHRRSGNVISSEIHNVEDIQSRSNQGHDSRETAQSCLSCLETIMEVFTEFFSIGDEAKSLVLLNSTSIDCLFDLFWQESLRGRVLKHTLELIKIKPISEEDQKAKLYICTKYLEMFAQIKEREKSSTELSIDLLVGIREMVLNDPQYYQTLFRDGECFLHIVSLLNGNVDEANGEKLILNVLQTLTCLLAKNEVSKASFRALAGKGYQTMQTLLLDFCQCHPSDALLTALLDMLVDGNFDSKLCPIIQNEDVIILYLSVLQKSSEPLQHQGLNMFQQLLRDSISNRASCVRAGMLTFLLDWFGQDNNDDVIVKIAQLIQVIGGHSVSGKDIRKIFALLRSEKVGKQRRYCSLLMASILSMLTEKGPTAFFDLSGNNSGILIKTPVQWPLNKGFSFSCWLRVENFPIHGTMGLFSFLTENGRGCLAVLAKNKLIYESINLRRQSVRLHVNVVRKKWHFLCITHSIGRAFSGGSLLRCYVDGDLVSSERCRYAKVNEPLTNCTVGAKFNVSLSEEVDTKESVEAAFPFLGQIGPVYLFSDAISSEQVQGIHSLGPSYMYSFLDNDIATFSENQLPRGILNAKESLASKIIFGLNAQASSGKSLFNVSPTLDLILEKNSFEATAMGGTELCSRRLLQRIIYCVGGVTVLFPLISQSDRYESESNGQDVDVIGTKECLTAEVIELIASVLDENLPNQHQMHLLSGFSILGFLLQSVNPQQLNMETLAALKHLFNVIANCGFCEHLIQDAISSIFLNLSIWIYSAYEVQRELYLFLIQQFDNDPRLLKNLCRLPLILDMICKFYCDKAKCKFASGSKTSLHPPVEALGERPTKDEIRKIRLLLLSLGEMSIRQNMVAADIKALIAFFERNQDVTCIEDVLHMVIRAIAQKTVLASFHEQVNFIGGCPIFVNLLQREFEPIRLLSLQFLGRLLVGLPSEKKGLRFFNLPSGKAKSVQDSNKNTSLRMQPLFSAISDRLFRFPPTDNLCAALFDVLLGGASPKQVLQKQNQSDGQRNKSPGSHFAVPQSLVLIFQFLCSCEDISARLKIITDLLDLLETNPSNIEAFMEYGWNAWLTACVKLDALQQYKVGSLDQVDDKINEQCIIRKLFSVVLLHCIWSVKGGWQQLEETATFLLMQSEKGQVSFKYFLRDMYEDLIQMLVDLSSGENIFVAQPCRDNTLYLLRLIDDMLIAELDHQLPILATVFDVSLDSTELELYISALHDVLQGESDDGTARYSQHQMEVKDDMMDEKWWHLYDKLWIIISEINGKGPNKTLPKSSTSGGPTFGQRARGLVESLNLPAAEMAAVVVSGGIGSALGGKPNRIADKAMLLRSERFPRIILRLVMLYICKSPLEKASRCAQQFISLLPSLVVTDDEQNKNRLQLFIWSLLAVRSQYRMLNNDARIHVISHLIRGTVSCCKSILANSIISTDDSSDTGVFIKETGYIHNLIQKERVTAAMRTRDED 1522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27653391 27692400 + CaPI482276_11g014870.1 Cam11g1487 140409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1487 1522 SUPERFAMILY Concanavalin A-like lectins/glucanases 428 616 IPR013320 -
Cam11g1487 1522 Pfam Concanavalin A-like lectin/glucanases superfamily 437 609 - -
Cam11g1487 1522 Pfam Neurobeachin/BDCP, DUF4704 alpha solenoid region 676 1192 IPR031570 -
Cam11g1487 1522 SUPERFAMILY ARM repeat 8 387 IPR016024 -
Cam11g1487 1522 Gene3D - 426 624 - -
Cam11g1487 1522 PANTHER BEIGE/BEACH-RELATED 2 1493 IPR050865 -
Cam11g1487 1522 Pfam Neurobeachin alpha solenoid region 3 424 IPR046852 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1487 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0838 Cam-Chr2:10842442 Cam11g1487 Cam-Chr11:27653391 1.20E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g530 . Blo12g00736 . Bda03g00451 . Bpe04g00414 . . . . Cma01g01471 . . . . . . . . . . . . . . . . . . . . Cone4ag1289 . . . Lsi04g02285 Csa03g04501 Chy04g00200 . . . . . . . . . . Cmo01g01527 . . . . . . Cpe02g00481 Bhi09g02508 . . . Hepe01g2176 Mch11g0715 . Cla11g01433 Cam11g1487 Cec11g1521 Cco11g1517 Clacu11g1649 Cmu11g1467 Cre11g1885 . . . Cme04g00231