Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g1492 | ATTGAAGCAACAGATTTCAAGGTAATTGTAGAAAATGATGAACAAATTGAACTCTCATTCAGCAGAACTTACAATTCATCCATCGGACGCGACCTCATTCCCTTGAACATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCAGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCTCCGAAAAGACAAGTTTCGTTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTACCCGACGATCGGAAGCCACCGCGAGGGGAAGCCCTGGCTTATCCGGAGGCCGTCCTTCTTCTCGATCCTATCGAACCAGAGCTCAAGGGAGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGACGCTCGAGTTCACGGGTGGATATCCACCGACCCGCCCATTGGCCTTTGGCAAATCTCACCGACCGAGGAGTTTCGCTCCGGTGGGCCCCTGAAACAGTTTCTCACTTCCCATGTCGGTCCCACAACCCTTACTGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTTGTAAAGTTCGGTGGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTAGACTCTGGCAAAATGCTAAAGAACAGATGATGACTGAAGTTCAAAGCTGGCCTTACGGTTTCCTTGCTTCTGAGGATTTTCTCAAATCCGATCAACGAGGCACCGTCAGCGGCAGATTGATAATCCGGGAGAGATTTGTGAGTGATGAATCTGTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACCGAAAGCAAGGGCTACCAATTCTGGACTAGGGCAGATCAGAATGGTTCTTTCTCTTTGAATAATGTTCGCAGTGGAAATTATAGTCTTTATGGATGGGTCCCCAATTTTATCGGCAATTACCAATACAATCATTTCATCACTGTAACCCCAGGCAGTGATATCAATGTGGGCGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTATGTACCGTATCCTAATCCAAAGTATATTAATAAACTTTATGTCAATCATTCAGATAGGTTTAGGCAGTATGGATTATGGGAAAGATACGCAGAGTTATATCCTGATAAGGATCTAGTTTATACAGTCGGGCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCTGGAACTACCTGGAAAATTAAGTTCCAACTTGACAGTCCAGATACACATGGAACATATAGGCTGCGTCTTGCATTGGCTACTGCACATGCTGCAGAATTACAAGTTCGGCTGAATGATGCACAAGCACTGTCTCCATTATTCACAACTGGATTGATTGGAAGGGACAATACTATAGCTAGACATGGAATCCATGGTCTCTATCGGCTGTACACGGTTGACATTCCGGGCAGTGAGCTTGTGAGCATAAGAGGGTCACTCCTCTCCTCTCAGTTCCAACCAGTAGAGATTGACACCTTCCTTGGCTTGGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCTGGGACTCTGGGAACGACGGGAACATTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAGGAACAAATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGACAAGTCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGCAACTCCTCTGGGTTCTACTCCTATGCCATCTATGAGCACATGAAGGAATGGCCACCATTCAACCTTCCTCAAACAAGGATTGTGTTTAAGCTACGAAAGGACAAGTTTCATTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTATTGCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGCGGACCCCTCAAACAGAACCTTACCTCTCATGTGGGCCCATATACTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGCTCAGTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTCTTTTTCTATCTAAATTCTGTTTCTGATGGAGGCGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCGGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTCCTTGACAGATATGTTAACCAAGAGCAAATGCCGGCTACTGACGCGTATGTGGGACTGGCAGCACCAGGAGATGTTGGATCATGGCAGACCGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCATTTAGCATTGAGCACGTACGCATCGGGGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGCTATCATTAGTGTATCTGCAGGTAGTGATATGGACATAGGTGATCTTGTTTATGAGCCACCTAGGAACGGGCCCACATTGTGGGAAATAGGCATTCCCGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAAGTACATAAACAAATTGTATGTCAATCATCCGGATAGATTTAGGCAATATGGACTGTGGGAAAAATATGCAGAGTTATATCCTGATTCAGACTTAGTATATACAGTTGGTGTTAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGAACGAGAAATGATGGATCCCATTTAGCAACCACTTGGGAAATCAAGTTTACACTTGATAATGTCATAGATAAGAGCGGCACCTATACATTACGAGTGGCTTTGGCCACTGCCAATGTTGCCGAATTGCAGGTAAATAATCCAGAAGCCAAGCCTAGTTTGTTTACAACAGGAGTGATTGGGCATGATAATGCAATCGCTAGGCATGGAATTCATGGACTCTATCGACTTTATAGTGTGGACATATTGGGATCTCTCCTGGTGGAAGGAGAGAACACAATCTTCCTTTCACAAATTATAAGCAGTTCATCTTTCAACGGCCTCATGTATGATTATATCCGCCTCGAAGGCCCCCCATCCCACACTTCTACAAATTCATAA | 3528 | 44.25 | IEATDFKVIVENDEQIELSFSRTYNSSIGRDLIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKLRKDKFRYMAVADKRQRFMPLPDDRKPPRGEALAYPEAVLLLDPIEPELKGEVDDKYQYGCESKDARVHGWISTDPPIGLWQISPTEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVVKFGGNEPWKKVFGPIFIHLNSLPEGEDPLRLWQNAKEQMMTEVQSWPYGFLASEDFLKSDQRGTVSGRLIIRERFVSDESVPASGAYVGLALPGELGSWQTESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVPNFIGNYQYNHFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPYPNPKYINKLYVNHSDRFRQYGLWERYAELYPDKDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQALSPLFTTGLIGRDNTIARHGIHGLYRLYTVDIPGSELVSIRGSLLSSQFQPVEIDTFLGLVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTLGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYSFKDKSVPLNIDKRFIMLRNSSGFYSYAIYEHMKEWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNQEQMPATDAYVGLAAPGDVGSWQTENKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDAIISVSAGSDMDIGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDSDLVYTVGVSDYTKDWFFAHVNRTRNDGSHLATTWEIKFTLDNVIDKSGTYTLRVALATANVAELQVNNPEAKPSLFTTGVIGHDNAIARHGIHGLYRLYSVDILGSLLVEGENTIFLSQIISSSSFNGLMYDYIRLEGPPSHTSTNS | 1175 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27716227 | 27729833 | - | CaPI482276_11g014920.1 | Cam11g1492 | 140414 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g1492 | 1175 | SUPERFAMILY | Galactose-binding domain-like | 974 | 1165 | IPR008979 | - | |
Cam11g1492 | 1175 | Gene3D | - | 256 | 356 | - | - | |
Cam11g1492 | 1175 | Gene3D | - | 865 | 964 | - | - | |
Cam11g1492 | 1175 | Gene3D | - | 554 | 808 | IPR014718 | GO:0030246(InterPro) | |
Cam11g1492 | 1175 | Gene3D | - | 16 | 211 | IPR014718 | GO:0030246(InterPro) | |
Cam11g1492 | 1175 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 532 | IPR051850 | - | |
Cam11g1492 | 1175 | CDD | RGL4_M | 259 | 358 | IPR029413 | - | |
Cam11g1492 | 1175 | Pfam | Polysaccharide lyase family 4, domain II | 892 | 962 | IPR029413 | - | |
Cam11g1492 | 1175 | Pfam | Polysaccharide lyase family 4, domain II | 282 | 354 | IPR029413 | - | |
Cam11g1492 | 1175 | FunFam | Rhamnogalacturonate lyase B | 865 | 964 | - | - | |
Cam11g1492 | 1175 | SUPERFAMILY | Starch-binding domain-like | 256 | 356 | IPR013784 | GO:0030246(InterPro) | |
Cam11g1492 | 1175 | CDD | RGL4_N | 552 | 838 | - | - | |
Cam11g1492 | 1175 | Gene3D | - | 975 | 1165 | - | - | |
Cam11g1492 | 1175 | Gene3D | - | 366 | 553 | - | - | |
Cam11g1492 | 1175 | CDD | RGL4_M | 868 | 967 | IPR029413 | - | |
Cam11g1492 | 1175 | CDD | RGL4_N | 1 | 219 | - | - | |
Cam11g1492 | 1175 | Pfam | Rhamnogalacturonate lyase family | 1 | 128 | IPR010325 | - | |
Cam11g1492 | 1175 | Pfam | Rhamnogalacturonate lyase family | 545 | 737 | IPR010325 | - | |
Cam11g1492 | 1175 | FunFam | Rhamnogalacturonate lyase B | 256 | 355 | - | - | |
Cam11g1492 | 1175 | Pfam | Polysaccharide lyase family 4, domain III | 977 | 1164 | IPR029411 | - | |
Cam11g1492 | 1175 | Pfam | Polysaccharide lyase family 4, domain III | 368 | 530 | IPR029411 | - | |
Cam11g1492 | 1175 | SUPERFAMILY | Galactose-binding domain-like | 365 | 529 | IPR008979 | - | |
Cam11g1492 | 1175 | CDD | RGL4_C | 979 | 1165 | - | - | |
Cam11g1492 | 1175 | CDD | RGL4_C | 370 | 541 | - | - | |
Cam11g1492 | 1175 | SUPERFAMILY | Galactose mutarotase-like | 555 | 828 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cam11g1492 | 1175 | SUPERFAMILY | Starch-binding domain-like | 865 | 964 | IPR013784 | GO:0030246(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam11g1492 | Cam-Chr11:27716227 | Cam11g1493 | Cam-Chr11:27738624 | 3.40E-266 | tandem | |
Cam01g1868 | Cam-Chr1:32217605 | Cam11g1492 | Cam-Chr11:27716227 | 1.00E-209 | wgd | |
Cam11g1492 | Cam-Chr11:27716227 | Cam08g1611 | Cam-Chr8:22282428 | 4.20E-264 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g1492 | K18195 | - | csv:101204193 | 1233.78 |