Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g1493 | ATGTCATCCAGATCAGGCGTACGATTGCAGATACGAGATCATCATGTGGTAGTGGATAATGGAATACTGCAACTAACCTTATCAAAACCTGATGGAATTATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTTAACCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGGGGCAAGGGAATATTTGATGTGATTAAAGGGTCAAATTTTAGGGTTGTAGTGGAAAATGAGGAACAGGTCGAACTGTCTTTTACGAGGATGTGGGATCCCTCCCTCAAGGGCAAGTTCGTTCCTTTAAATATTGACAAAAGGTTCATAGTACTACGCGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGCGAAACCAGGATCACTTTTAAACTTAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCCTGCCCGATGATCGGTTACCTGGAAGATGCCAAACTTTGGCCTACCCTGAAGCTGTCTTGCTGACTAATCCCAAGAACCCTGAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACATAGACTTAAAGGTTCATGGATGGATATGCACCAATCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTCCGGTCAGGGGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTCAGTACTCATTATGCGGGACAAGATTTAGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTCAATTCCACCTCAGTTGGAGATGATCCGTTTTGGTTATGGGAGGATGCTAAAATTCAGATGATGGCGGAAGTCGAAAGTTGGCCTTATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTAGATCAACGGGGTATTGTTAGTGGTCGGCTACTGGTTTTTGACAGGTATGTGAGTCAAGACTATCTTCCGGCCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGTGGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCTACTACAATTTATATGCATGGGTCCCTGGCTTCGTTGGAGATTACCGTTGTGAAGCCCTCATCAACGTAAACCAAGGATCTTTTATTGAAATGGGCGATCTTGTATATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCTGCGTCTGAGTTCTATGTTCCTGATCCTAATCCAATTCATATTAATAAGCTCTTTGTCAACCATCCTGACAGGTTCCGGCACTACGGGTTGTGGGACAGATATGCTGAATTATACCCGGATGAGGATTTAGTATACACTGTTGGTACAAGTGACTATACCAAAGATTGGTTCTTTGCTCAGGTTCCTAGGAAGAAAAACAGTAATTCACATGAAGGAAGTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGATCACAAGAATATATATACACTACGGGTTGCAATTGCATCTGCTACTCTTGCTGAATTGCAGGTCCGGGTAAATGATCCGAGATCGAAGCGACCTTTGTTCACGAGCGGATTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTATAGCGTGGGCATAGCAGGCTGTCATCTTGTTGAAGGAGATAACATAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAAATGGAAATTCATTATCGCGAAATTAATTTGCTAG | 1938 | 43.6 | MSSRSGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGGKGIFDVIKGSNFRVVVENEEQVELSFTRMWDPSLKGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLPGRCQTLAYPEAVLLTNPKNPELKGEVDDKYQYSCENIDLKVHGWICTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMAEVESWPYSFPASEDFPKVDQRGIVSGRLLVFDRYVSQDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHTGYYNLYAWVPGFVGDYRCEALINVNQGSFIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVNHPDRFRHYGLWDRYAELYPDEDLVYTVGTSDYTKDWFFAQVPRKKNSNSHEGSTWQIKFKLDRVDHKNIYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGCHLVEGDNIIFLTQPRCTSPFQGIMYDYIRLEGPPTKWKFIIAKLIC | 645 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27738624 | 27746159 | - | CaPI482276_11g014930.1 | Cam11g1493 | 140415 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g1493 | 645 | CDD | RGL4_C | 443 | 630 | - | - | |
Cam11g1493 | 645 | CDD | RGL4_N | 15 | 294 | - | - | |
Cam11g1493 | 645 | FunFam | Rhamnogalacturonate lyase B | 329 | 428 | - | - | |
Cam11g1493 | 645 | SUPERFAMILY | Starch-binding domain-like | 332 | 427 | IPR013784 | GO:0030246(InterPro) | |
Cam11g1493 | 645 | Gene3D | - | 8 | 302 | IPR014718 | GO:0030246(InterPro) | |
Cam11g1493 | 645 | Pfam | Rhamnogalacturonate lyase family | 3 | 201 | IPR010325 | - | |
Cam11g1493 | 645 | SUPERFAMILY | Galactose mutarotase-like | 13 | 297 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cam11g1493 | 645 | Gene3D | - | 439 | 630 | - | - | |
Cam11g1493 | 645 | Pfam | Polysaccharide lyase family 4, domain II | 355 | 424 | IPR029413 | - | |
Cam11g1493 | 645 | CDD | RGL4_M | 332 | 431 | IPR029413 | - | |
Cam11g1493 | 645 | SUPERFAMILY | Galactose-binding domain-like | 438 | 630 | IPR008979 | - | |
Cam11g1493 | 645 | Pfam | Polysaccharide lyase family 4, domain III | 441 | 629 | IPR029411 | - | |
Cam11g1493 | 645 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 4 | 633 | IPR051850 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1868 | Cam-Chr1:32217605 | Cam11g1493 | Cam-Chr11:27738624 | 2.00E-221 | dispersed | |
Cam01g2243 | Cam-Chr1:34859465 | Cam11g1493 | Cam-Chr11:27738624 | 2.70E-201 | dispersed | |
Cam08g1611 | Cam-Chr8:22282428 | Cam11g1493 | Cam-Chr11:27738624 | 1.40E-282 | dispersed | |
Cam10g0806 | Cam-Chr10:16149035 | Cam11g1493 | Cam-Chr11:27738624 | 4.50E-234 | dispersed | |
Cam11g1492 | Cam-Chr11:27716227 | Cam11g1493 | Cam-Chr11:27738624 | 3.40E-266 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g1493 | K18195 | - | csv:101203947 | 1257.66 |