Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1493 ATGTCATCCAGATCAGGCGTACGATTGCAGATACGAGATCATCATGTGGTAGTGGATAATGGAATACTGCAACTAACCTTATCAAAACCTGATGGAATTATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTTAACCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGGGGCAAGGGAATATTTGATGTGATTAAAGGGTCAAATTTTAGGGTTGTAGTGGAAAATGAGGAACAGGTCGAACTGTCTTTTACGAGGATGTGGGATCCCTCCCTCAAGGGCAAGTTCGTTCCTTTAAATATTGACAAAAGGTTCATAGTACTACGCGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGCGAAACCAGGATCACTTTTAAACTTAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCCTGCCCGATGATCGGTTACCTGGAAGATGCCAAACTTTGGCCTACCCTGAAGCTGTCTTGCTGACTAATCCCAAGAACCCTGAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACATAGACTTAAAGGTTCATGGATGGATATGCACCAATCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTCCGGTCAGGGGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTCAGTACTCATTATGCGGGACAAGATTTAGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTCAATTCCACCTCAGTTGGAGATGATCCGTTTTGGTTATGGGAGGATGCTAAAATTCAGATGATGGCGGAAGTCGAAAGTTGGCCTTATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTAGATCAACGGGGTATTGTTAGTGGTCGGCTACTGGTTTTTGACAGGTATGTGAGTCAAGACTATCTTCCGGCCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGTGGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCTACTACAATTTATATGCATGGGTCCCTGGCTTCGTTGGAGATTACCGTTGTGAAGCCCTCATCAACGTAAACCAAGGATCTTTTATTGAAATGGGCGATCTTGTATATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCTGCGTCTGAGTTCTATGTTCCTGATCCTAATCCAATTCATATTAATAAGCTCTTTGTCAACCATCCTGACAGGTTCCGGCACTACGGGTTGTGGGACAGATATGCTGAATTATACCCGGATGAGGATTTAGTATACACTGTTGGTACAAGTGACTATACCAAAGATTGGTTCTTTGCTCAGGTTCCTAGGAAGAAAAACAGTAATTCACATGAAGGAAGTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGATCACAAGAATATATATACACTACGGGTTGCAATTGCATCTGCTACTCTTGCTGAATTGCAGGTCCGGGTAAATGATCCGAGATCGAAGCGACCTTTGTTCACGAGCGGATTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTATAGCGTGGGCATAGCAGGCTGTCATCTTGTTGAAGGAGATAACATAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAAATGGAAATTCATTATCGCGAAATTAATTTGCTAG 1938 43.6 MSSRSGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGGKGIFDVIKGSNFRVVVENEEQVELSFTRMWDPSLKGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLPGRCQTLAYPEAVLLTNPKNPELKGEVDDKYQYSCENIDLKVHGWICTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMAEVESWPYSFPASEDFPKVDQRGIVSGRLLVFDRYVSQDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHTGYYNLYAWVPGFVGDYRCEALINVNQGSFIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVNHPDRFRHYGLWDRYAELYPDEDLVYTVGTSDYTKDWFFAQVPRKKNSNSHEGSTWQIKFKLDRVDHKNIYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGCHLVEGDNIIFLTQPRCTSPFQGIMYDYIRLEGPPTKWKFIIAKLIC 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27738624 27746159 - CaPI482276_11g014930.1 Cam11g1493 140415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1493 645 CDD RGL4_C 443 630 - -
Cam11g1493 645 CDD RGL4_N 15 294 - -
Cam11g1493 645 FunFam Rhamnogalacturonate lyase B 329 428 - -
Cam11g1493 645 SUPERFAMILY Starch-binding domain-like 332 427 IPR013784 GO:0030246(InterPro)
Cam11g1493 645 Gene3D - 8 302 IPR014718 GO:0030246(InterPro)
Cam11g1493 645 Pfam Rhamnogalacturonate lyase family 3 201 IPR010325 -
Cam11g1493 645 SUPERFAMILY Galactose mutarotase-like 13 297 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cam11g1493 645 Gene3D - 439 630 - -
Cam11g1493 645 Pfam Polysaccharide lyase family 4, domain II 355 424 IPR029413 -
Cam11g1493 645 CDD RGL4_M 332 431 IPR029413 -
Cam11g1493 645 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
Cam11g1493 645 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
Cam11g1493 645 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 633 IPR051850 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1868 Cam-Chr1:32217605 Cam11g1493 Cam-Chr11:27738624 2.00E-221 dispersed
Cam01g2243 Cam-Chr1:34859465 Cam11g1493 Cam-Chr11:27738624 2.70E-201 dispersed
Cam08g1611 Cam-Chr8:22282428 Cam11g1493 Cam-Chr11:27738624 1.40E-282 dispersed
Cam10g0806 Cam-Chr10:16149035 Cam11g1493 Cam-Chr11:27738624 4.50E-234 dispersed
Cam11g1492 Cam-Chr11:27716227 Cam11g1493 Cam-Chr11:27738624 3.40E-266 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1493 K18195 - csv:101203947 1257.66