Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1503 ATGAATTGGGAATTAGCAATGTCTATGGAAATGAATGAGTTAATTTGTAGTGCAAATGGTTGGAATTTCGATTGCTCTGATTCTTCAGCAATGGATCAGCACAATCTTAATTATCTTCTCGGTGGGCAAGGTCAGTACTGTTTGCCTACGGCGGCGGGGAGTACCGGCGATTCAATGTTGGAGACTCCGCCGAGTAGTTTTGAGGTTTATAATGGGGAATATCCGATTACGAGTATGGAAGAGGAGGAACTTGGAATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCTAATTATTGTAAAGTTGAGGCTAATGTTGAATCTCCTATCCCCATTTTCAACACGGGTGGCACGTGCGACGATTTTCCCAAACAAAAAATCGTCAATTACTCGTGTACTAAGAAGCTTCAGGGGCAGCCGTCCAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGTCTCAACGATCGCCTCTCTATGCTCAGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACCGCGATTCTGGCAGATGCAATTGAGTACGTGAAGGAACTGATGGAGAAAATTAAGAGGTTGGAAAGGGAAATTGAGGTGAATAATAATAATAATCCGAATAAGTTGGGGATTATGAGAGATGTGAAACCAAATAATGAATATTTGATGAGAAATTCACCCAAGTTTAATGTGGAAAGAAGAGAAGATGACACAAGGATTGAGATTTGTTGTGCAGCAAAGCCAGGGTTATTATTGTCCACAGTGCACACTCTTGAAACATTGGGGCTTGATATTCAGCAGTGTGTTATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCTGAGGGAAGCGAGCAGAGAACAATAGTGAGCACTGAAGAAGTAAAGCAAGCATTATTTGAAAATGCTGGCTATGGAGGAAAATGCTTGTAG 942 41.83 MNWELAMSMEMNELICSANGWNFDCSDSSAMDQHNLNYLLGGQGQYCLPTAAGSTGDSMLETPPSSFEVYNGEYPITSMEEEELGILEDEIHNLEVQANYCKVEANVESPIPIFNTGGTCDDFPKQKIVNYSCTKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELMEKIKRLEREIEVNNNNNPNKLGIMRDVKPNNEYLMRNSPKFNVERREDDTRIEICCAAKPGLLLSTVHTLETLGLDIQQCVISCFNDFAIQASCSEGSEQRTIVSTEEVKQALFENAGYGGKCL 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27865081 27867799 + CaPI482276_11g015030.1 Cam11g1503 140425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1503 313 CDD ACT_UUR-ACR-like 239 302 - -
Cam11g1503 313 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 120 308 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam11g1503 313 Coils Coil 178 205 - -
Cam11g1503 313 SMART finulus 145 194 IPR011598 GO:0046983(InterPro)
Cam11g1503 313 Pfam Helix-loop-helix DNA-binding domain 146 188 IPR011598 GO:0046983(InterPro)
Cam11g1503 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983(InterPro)
Cam11g1503 313 Coils Coil 77 97 - -
Cam11g1503 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 204 IPR036638 GO:0046983(InterPro)
Cam11g1503 313 Gene3D - 134 206 IPR036638 GO:0046983(InterPro)
Cam11g1503 313 Pfam Plant bHLH transcription factor, ACT-like domain 231 302 IPR054502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1414 Cam-Chr5:16542795 Cam11g1503 Cam-Chr11:27865081 2.10E-32 dispersed
Cam11g1195 Cam-Chr11:23588468 Cam11g1503 Cam-Chr11:27865081 8.70E-13 dispersed
Cam01g1862 Cam-Chr1:32156809 Cam11g1503 Cam-Chr11:27865081 4.30E-68 wgd
Cam11g1503 Cam-Chr11:27865081 Cam08g1649 Cam-Chr8:22691664 3.50E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52925 PF00010 HLH 5.30E-10 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1503 - - - 0.0