Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1509 ATGTCGTCTCTACATTTTCTCTGCTTTTTCTCTCTAATTTCCATCGCCTTTCTCCCTGGAATCAAATCTGACGACGAACGTCAAATCCTAACCAAACTCAAATCCTCACTCCAAAATTCAAACGCCAATGTCTTCCACAACTGGGGATTTCAAAATCCCATCTGCAATTTCACCGGAATCGCTTGTAATTCAGATGGGTTTGTTAAGGAAATTAACCTATCCAAACGGGGTTTATCTGGGATTGTTCCGTTTGATTCCGTTTGCCAATTGCAAGCCTTGGAGAAGTTGGCTCTTCGGTCTAATTCCCTGCACGGTGAAATCACAGAGGGTTTGAATAATTGTGTGAAATTGAAGTATTTGGATCTCAGCAGCAATTCCTTCTCTGGTTCTTTTCCCAACATACATTCTTTGAGTGAATTGGAGTATTTGTATTTGAATGTAAGTGGGATTTCAGGAAAGTTTCCATGGAAATCAGTTGGGAATTTGAGTGGTTTGATTGAGTTGAGTGTTGGGGATAACGCTTTTGAAAACACTACGTTTCCCGTGGAGGTTACTAATTTGAAGAAGCTTAATTGGCTTTACTTGTCAAACTGCAGCTTAACAGGGGAAATTCCAAGGTCTATAGGTAATCTCACACAGCTTCTTAATTTGGAATTTTCGGATAATTATATAACAGGGACTATTCCGCCGGAGATTGCCAACCTGCAGAAGCTATGGCAGTTGGAATTCTACGGTAATCAATTAACGGGGACACTTCCAGTGGGATTAAGAAATCTAACCGGGCTTAAGAATTTTGATGCTTCTTTGAATCAAATTCATGGGGATTTATCAGAGTTGAGGTTTTTGACGAACCTGGTTTCTCTGCAAATGTTTGAAAATCAAATTTCCGGCGAAATTCCGGTGGAGTTTGGTGAATTCAAGTCACTGGTGAATCTCTCCCTTTACAAGAACAAGCTTACAGGGCCTCTTCCGCAATCGATTGGTTCTTGGACGGAGTTTGATTTTATTGATGTATCTGAAAATTTCTTGACGGGGCCGATTCCTCCTGATATGTGCAAGAAGGGGACGATGCAGAAGCTTCTCATTCTTCAGAACAATTTTACCGGTGAAATTCCGGCAACCTACGCTAACTGCTCCACTTTAACCCGATTTAGAGTCAGTCAGAACTCGCTCACCGGAGTCGTTCCGTCTGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGCCTCGAATCAGTTGGAAGGTTCAATCACTCCCAACATTGGAAAGGCTGTGGCTCTCTCGGAATTATACATCGGAAATAATCGATTCTCAGGTCGACTGCCAACGGAGATTTCGCAAGCAAAATCTCTCGCTTCGGTTGACCTGAGCAATAATCAATTCACCGATGAACTTCCGATGACTATCGGCGACCTGAAGAATCTCGATAGCTTCGAATTGCAGGGGAATAAATTCTCCGGTTCGATTCCAGAGACGATCGGCTTGTGTAATTCCTTGAGCATCATCAATCTGGCGGATAATTTCTTCTCTGGACAAATCCCTTCGTCGCTAGGGTTTCTTCCAGTTCTAAACTCTTTGAATCTCTCCAATAACGGCCTATCGGGTGAAATCCCCTCGACGTTTTCGCATCTGAAATTGAGTTTTCTCGATCTTTCCAACAATCAATTAACCGGTCCAGTACCTCAAGCGCTCTCGAATGGAGCTTACAAAGAAAGCTTTGCCGGAAACCCTGGCCTCTGCAGTGAGGCCGATGACTTTATACGGCGATGTTCACAGAGTTCCGGCGCGTCGAAGGACGTCAAAACACTTGTCATCTGTTTCGCCGTCGGATTAATCCTTCTCAGTGTGACGCTGTGGTGCTTCATAACCTTGAAAAAGAGCAGAAAAGATCGAGATCGATCGCTTAAAGAAGAATCGTGGGACCTAAAATCGTTCCACGTAATGACGTTCACAGAGGACGAGATACTCGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTTTACAAAGTGACTGTCGGAAACGGAAAAGAATTCGCCGTGAAGCACATTTGGAACACTAATCCGTACGAAGGGAAGAAGAAGAATTACCGTAGTTCATCGCCGATTCTGGTGAAACAGAGAACGAAGTCATCGGAATTTGAGTCGGAAGTGAAGACTCTAAGCTCGATCCGCCACGTGAACGTGGTGAAGCTGTACTGCAGCATCACGAGCGAGGTTTCGAGTCTGTTGGTGTACGAATACATGCCGAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAAACAAGATACGAAATCGCCGTGGGAGCGGCGAAGGGACTGGAGTATCTTCATCACGGTTGTGACCGGCCGGTGATCCACCGGGATGTTAAGTCGAGTAACATACTTTTGGATGAATTTCTGAAGCCGAGAATCGCGGATTTTGGGCTTGCCAAAATTCTTCACACAACTGGGTTCAACGAGACCACCCATGTCATTGCCGGCACCCCGGGCTACATCGCACCAGAGTATGGATACACTTACAAAGTCGATGAGAAGAGCGACGTGTACAGTTTTGGAGTTGTATTGATGGAGTTAGTGAGTGGGAAAAAGGCAATAGAGGCCGAGTTTGGAGAGAACAAGGAGATTGTACAATGGGTATCAAACAATTTGAAGACAAGAGAAAGTGTATTAAGCTTAGTAGATTCAAGAATTCCAGATGTATTTAAAGAGGATGCAATAAAGGTATTAAGAATTGCAATTTTGTGCACAGCAAGACTTCCCACTTTGAGACCCACAATGAGAAGTGTCGTTCAAATGCTCGAAGAAGCTCAACCTTGTCGCTTGCTTGGGATTCTCATTACCAAAGATGGTGGGACTGTTAAAAAGGAATTATCTTTGGATGTCAATAAAATTAGTCTCTAA 2949 43.81 MSSLHFLCFFSLISIAFLPGIKSDDERQILTKLKSSLQNSNANVFHNWGFQNPICNFTGIACNSDGFVKEINLSKRGLSGIVPFDSVCQLQALEKLALRSNSLHGEITEGLNNCVKLKYLDLSSNSFSGSFPNIHSLSELEYLYLNVSGISGKFPWKSVGNLSGLIELSVGDNAFENTTFPVEVTNLKKLNWLYLSNCSLTGEIPRSIGNLTQLLNLEFSDNYITGTIPPEIANLQKLWQLEFYGNQLTGTLPVGLRNLTGLKNFDASLNQIHGDLSELRFLTNLVSLQMFENQISGEIPVEFGEFKSLVNLSLYKNKLTGPLPQSIGSWTEFDFIDVSENFLTGPIPPDMCKKGTMQKLLILQNNFTGEIPATYANCSTLTRFRVSQNSLTGVVPSGIWGLPNVNIIDLASNQLEGSITPNIGKAVALSELYIGNNRFSGRLPTEISQAKSLASVDLSNNQFTDELPMTIGDLKNLDSFELQGNKFSGSIPETIGLCNSLSIINLADNFFSGQIPSSLGFLPVLNSLNLSNNGLSGEIPSTFSHLKLSFLDLSNNQLTGPVPQALSNGAYKESFAGNPGLCSEADDFIRRCSQSSGASKDVKTLVICFAVGLILLSVTLWCFITLKKSRKDRDRSLKEESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKEFAVKHIWNTNPYEGKKKNYRSSSPILVKQRTKSSEFESEVKTLSSIRHVNVVKLYCSITSEVSSLLVYEYMPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHTTGFNETTHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLMELVSGKKAIEAEFGENKEIVQWVSNNLKTRESVLSLVDSRIPDVFKEDAIKVLRIAILCTARLPTLRPTMRSVVQMLEEAQPCRLLGILITKDGGTVKKELSLDVNKISL 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27951395 27954761 + CaPI482276_11g015090.1 Cam11g1509 140431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1509 982 Gene3D Transferase(Phosphotransferase) domain 1 756 956 - -
Cam11g1509 982 Pfam Leucine Rich Repeat 116 133 IPR001611 GO:0005515(InterPro)
Cam11g1509 982 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515(InterPro)
Cam11g1509 982 Pfam Leucine Rich Repeat 500 522 IPR001611 GO:0005515(InterPro)
Cam11g1509 982 Pfam Leucine Rich Repeat 547 568 IPR001611 GO:0005515(InterPro)
Cam11g1509 982 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
Cam11g1509 982 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515(InterPro)
Cam11g1509 982 Pfam Leucine Rich Repeat 452 474 IPR001611 GO:0005515(InterPro)
Cam11g1509 982 FunFam Leucine-rich receptor-like protein kinase family protein 183 278 - -
Cam11g1509 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1509 982 SUPERFAMILY L domain-like 24 349 - -
Cam11g1509 982 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524(InterPro)
Cam11g1509 982 Gene3D Ribonuclease Inhibitor 280 351 IPR032675 -
Cam11g1509 982 ProSiteProfiles Leucine-rich repeat profile. 116 138 IPR001611 GO:0005515(InterPro)
Cam11g1509 982 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cam11g1509 982 SMART serkin_6 661 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1509 982 Gene3D Ribonuclease Inhibitor 352 600 IPR032675 -
Cam11g1509 982 FunFam Receptor-like protein kinase HAIKU2 644 755 - -
Cam11g1509 982 FunFam Probable inactive receptor kinase RLK902 23 182 - -
Cam11g1509 982 SUPERFAMILY RNI-like 317 568 - -
Cam11g1509 982 FunFam Receptor-like protein kinase HSL1 284 591 - -
Cam11g1509 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 952 IPR050647 -
Cam11g1509 982 Gene3D Phosphorylase Kinase; domain 1 644 755 - -
Cam11g1509 982 ProSiteProfiles Protein kinase domain profile. 661 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1509 982 Pfam Protein kinase domain 663 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1509 982 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 756 959 - -
Cam11g1509 982 SUPERFAMILY Protein kinase-like (PK-like) 651 950 IPR011009 -
Cam11g1509 982 Gene3D Ribonuclease Inhibitor 23 179 IPR032675 -
Cam11g1509 982 Gene3D Ribonuclease Inhibitor 180 279 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1666 Cam-Chr8:22904380 Cam11g1509 Cam-Chr11:27951395 9.10E-74 dispersed
Cam10g0787 Cam-Chr10:14888227 Cam11g1509 Cam-Chr11:27951395 2.60E-73 dispersed
Cam10g0790 Cam-Chr10:15046422 Cam11g1509 Cam-Chr11:27951395 1.80E-74 dispersed
Cam11g1509 Cam-Chr11:27951395 Cam06g1783 Cam-Chr6:28985209 6.00E-54 dispersed
Cam11g1509 Cam-Chr11:27951395 Cam11g1510 Cam-Chr11:27968690 1.40E-95 tandem
Cam02g0772 Cam-Chr2:9434848 Cam11g1509 Cam-Chr11:27951395 1.10E-164 transposed
Cam01g1845 Cam-Chr1:31961259 Cam11g1509 Cam-Chr11:27951395 7.20E-60 wgd
Cam11g1509 Cam-Chr11:27951395 Cam09g0033 Cam-Chr9:1280932 8.80E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85590 PF00069 Pkinase 2.50E-43 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1509 - - - 0.0